Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq131 697 0.0 seq5 630 8e-176 seq21 556 1e-153 >seq131 Length=2205 Score = 697 bits (772), Expect = 0.0 Identities = 737/968 (76%), Gaps = 2/968 (0%) Strand=Plus/Minus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 ||| | ||||||||||| |||| ||||| |||||| | |||||||| || | || Sbjct 1309 ACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1250 Query 164845 GCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 || || | ||| ||||||| ||| ||||| || ||||| || || || ||||||||||| Sbjct 1249 GCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTAT 1191 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 |||||||||||| | || |||||| | ||||| ||||| || ||||| ||||| | | Sbjct 1190 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 1131 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 ||| ||||| || ||||| | ||||| ||||| ||||||||||| ||| || | || Sbjct 1130 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGA 1071 Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGT 165083 ||||||||| ||||| ||||||||||| | | |||| | |||||| | | ||||| Sbjct 1070 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 1011 Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143 |||||| |||||||||||||||||||| || || ||| || |||||||| |||||||| Sbjct 1010 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 951 Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203 | || |||||| || ||||| || |||||| |||| |||||| || |||| || | Sbjct 950 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 891 Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 165263 |||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| || Sbjct 890 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 831 Query 165264 GTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGC 165323 | | || ||||| || || || ||||| ||||||||||| || |||||| | ||||| || Sbjct 830 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGC 771 Query 165324 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACT 165383 ||| |||||||| || || || ||| |||||||||||| | || ||||| | Sbjct 770 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 711 Query 165384 CGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGA 165443 || | || || || |||| || | || | ||||| | || || ||||| || Sbjct 710 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 651 Query 165444 AGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGC 165503 ||| || ||||| ||||| || || || || || || || || | || |||||||| || Sbjct 650 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 591 Query 165504 ATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTAT 165563 |||||||| || |||||| | ||||||||||| || || ||||||||||| ||||| Sbjct 590 TAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTAT 531 Query 165564 CTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAA 165623 ||||||||||||| | ||| | || || |||||||||||||| || |||||||| || || Sbjct 530 CTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAA 471 Query 165624 CCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCG 165683 ||| ||| | |||||||| || | | || |||||||||||| || | ||||| Sbjct 470 CCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCG 411 Query 165684 TGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCT 165743 |||| ||||||||||||||||||||||| ||||| ||||| |||||||| || || || Sbjct 410 TGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCT 351 Query 165744 CGCTGCTG 165751 ||||||| Sbjct 350 AGCTGCTG 343 >seq5 Length=20976 Score = 630 bits (698), Expect = 8e-176 Identities = 692/918 (75%), Gaps = 2/918 (0%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||||||||| | || |||||||||||| | |||||||| || | | Sbjct 494 CACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGAC 553 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 ||| || | || ||||||| ||| ||||| |||||||| || || || |||||||||| Sbjct 554 CGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 612 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||||||||| | || |||||| | ||||| ||||| || |||| ||||| | Sbjct 613 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTA 672 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || ||||| | ||||| || || || |||||||| ||| || | | Sbjct 673 TTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTG 732 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||||||||| ||||||||||||||||| | | |||| | |||||| | | |||| Sbjct 733 ATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 792 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 |||||| ||||||||||||||||||||||| || ||| || |||||||| ||||||| Sbjct 793 TAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 852 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| ||| ||||| || |||||| |||| |||||| || |||| || Sbjct 853 TTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAA 912 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 |||||||||| ||||| ||||||||||||||||| || || | ||||||||| |||| | Sbjct 913 TCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCA 972 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| || || || ||||| |||||||| || || |||||| | ||||| | Sbjct 973 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAG 1032 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCAC 165382 |||| |||||||| || || || ||| |||||||||||| | || ||||| Sbjct 1033 CTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 1092 Query 165383 TCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAG 165442 | || | || || || |||| || | || | ||||| | || || ||||| | Sbjct 1093 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGG 1152 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 |||| || ||||| ||||| || || || || || || || || | || |||||||| | Sbjct 1153 AAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 1212 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | |||||||| || |||||| | ||||||||||| || || ||||||||||| |||| Sbjct 1213 CTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTA 1272 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCA 165622 |||||||||||||| | ||| | ||||| |||||||||||||| || || ||||| |||| Sbjct 1273 TCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCA 1332 Query 165623 ACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACC 165682 |||| ||| | ||||||||||| | | || |||||||||||| | | |||| Sbjct 1333 ACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACC 1392 Query 165683 GTGCTGGTCTGGGTATGG 165700 ||||| || ||||||| Sbjct 1393 GTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 556 bits (616), Expect = 1e-153 Identities = 721/990 (73%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| | ||| Sbjct 1074 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 1133 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| ||||| | || Sbjct 1134 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 1193 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || ||| |||| || || || ||||||| | || |||||||||||||| || || Sbjct 1194 AGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATA 1251 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | |||||| || | | || ||||||||||| || ||||| ||||| | | Sbjct 1252 GTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 1311 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | ||||||||||| || || ||||||| ||||| | Sbjct 1312 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAATAG 1371 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||||||| | || || ||||| | || || ||| | | | || || || |||||| Sbjct 1372 GTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAAT-TGCGACCTTATAATGCA 1430 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || ||||| || |||||||| || ||| ||| || || || || || || || Sbjct 1431 ATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGG 1490 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 || || ||||||| || || || ||| || || |||| || || ||||| |||| Sbjct 1491 CAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCTC 1550 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || |||||||||| || || ||||| ||||||||||||||||||||||| || || ||| Sbjct 1551 TTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGT 1610 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | ||| ||||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 1611 GTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 1670 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 |||||||||| |||||||| || || || || | ||||||| |||||||||| Sbjct 1671 GAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACC 1730 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 ||||| ||||| || || ||||||| |||||| || ||||| || |||| ||| ||| Sbjct 1731 TATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 1790 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 1791 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 1850 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | | ||| | || || ||||| ||||| || ||||| ||||| || ||| | Sbjct 1851 CTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATT 1910 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| ||||| || ||||| ||||| || ||||| || || || Sbjct 1911 CGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAA 1970 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 ||||| || |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 1971 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 2030 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 2031 GAGGTTCTACCACGTGGAAACGCTCTTTAA 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563613163616640