Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq131 524 9e-144 seq5 502 3e-137 >seq131 Length=2205 Score = 524 bits (580), Expect = 9e-144 Identities = 697/968 (72%), Gaps = 0/968 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| || || | ||||| | || | || ||||| ||||| ||||||||||| Sbjct 1321 TGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 1262 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || ||||| || || || Sbjct 1261 ACCTTATTGACCGCAACTTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGAT 1202 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || ||||| Sbjct 1201 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCA 1142 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || |||||| | ||||| ||||| |||||||||||| Sbjct 1141 GGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCA 1082 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 1081 GCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 1022 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | ||||||| || | |||| | |||||| Sbjct 1021 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATG 962 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || |||||| ||||| Sbjct 961 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 902 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| ||| || || || ||||||||||| || || ||||| Sbjct 901 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACT 842 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 841 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATG 782 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 781 TTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 722 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 721 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 662 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 661 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 602 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| ||| | ||||||||||| ||| | | ||| Sbjct 601 TTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCT 542 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||||| | |||||||| ||| | | ||||| | || |||||||| ||||| ||||| Sbjct 541 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGT 482 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || || ||||| || | || ||| | || ||| || ||| ||||| || Sbjct 481 TTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGAT 422 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || | ||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 421 ATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 362 Query 170659 CCACTTGA 170666 || || || Sbjct 361 CCTCTAGA 354 >seq5 Length=20976 Score = 502 bits (556), Expect = 3e-137 Identities = 668/928 (72%), Gaps = 0/928 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||||||||| ||||||||||| Sbjct 483 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCT 542 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || ||||| || || || Sbjct 543 ACCTTATTGACCGCAACTTCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 602 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || |||| Sbjct 603 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCA 662 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || |||||| | ||||| || || || ||||||||| Sbjct 663 GGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCA 722 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || ||||||||||||||| || || || | | |||||| Sbjct 723 GCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC 782 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || | ||||||||| | |||||||||| | |||| | |||||| Sbjct 783 TTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 842 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || |||||| ||||| Sbjct 843 CGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 902 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| ||| || || || ||||||||||| || | ||||| Sbjct 903 ATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACT 962 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 963 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 1022 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 1023 TTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 1082 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || || | |||| Sbjct 1083 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTC 1142 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 1143 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 1202 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | ||||||||||| ||| | | ||| Sbjct 1203 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCT 1262 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||||| | |||||||| ||| | | ||||| |||| |||||||| ||||| ||||| Sbjct 1263 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGC 1322 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | || ||| || ||| ||||| || Sbjct 1323 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGAT 1382 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGG 170626 | | ||| | || ||||| ||||||| Sbjct 1383 ATCATCAACCGTGCTAACCTTGGTATGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582798742058400