Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq131 619 1e-172 seq5 578 4e-160 >seq131 Length=2205 Score = 619 bits (686), Expect = 1e-172 Identities = 730/985 (74%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||||||||| || |||||||| ||||| ||||||||||| || Sbjct 348 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCCAGGTTA 407 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 ||||| || | | ||| ||||| ||||| | |||||| ||||||||| || | | Sbjct 408 GCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTACAGAT 467 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || || || || || ||||| || || |||||||| || || | ||| | ||||| ||| Sbjct 468 TGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAGTGAAC 527 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 || || || || || ||||||||||| | ||| ||||| | ||||| |||||||| Sbjct 528 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAGTTGTTGAAA 587 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||| |||||||| | || || || || || ||||| || || |||||||||||| Sbjct 588 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 647 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || ||||||||||| ||||||| | || || |||||||||| ||||| | | Sbjct 648 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 707 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||||||||| ||| |||||| | || ||||||||| Sbjct 708 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 767 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| ||||||||||||||||| || || |||||||| ||| Sbjct 768 CCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACA 827 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | |||| ||||||| || || || || || || ||||| |||||||| ||| ||||| Sbjct 828 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 887 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | || || | | ||| ||||| | || |||||||| ||||| || || |||||| Sbjct 888 CCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 947 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| || |||||||| ||||| | ||| ||||| ||||||||||||||| | Sbjct 948 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAA 1007 Query 84633 AATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCAT 84692 | |||||| | |||||| | |||| |||| |||||| |||||||| |||| |||| Sbjct 1008 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 1067 Query 84693 TCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGAT 84752 || || | ||||||||||||||| ||||| || || | ||| ||||| ||| | Sbjct 1068 TCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCTGCAGAAGTA 1127 Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 |||| | |||||| || || || ||||||||||| | ||||| |||| || || ||| Sbjct 1128 GGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 1187 Query 84813 CGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGT 84871 || ||||| |||||||| ||||| || || ||| ||| ||||| || || ||||| ||| Sbjct 1188 CGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACACAGA-AGT 1246 Query 84872 GGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTT 84931 || | | || || || ||||| | | |||||||| || | || | |||||| | Sbjct 1247 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 1306 Query 84932 AGTGGAGGTGACCCAATCACAGAAG 84956 || || | ||| | ||||||| Sbjct 1307 GGTACTAGTTATCCAGTTACAGAAG 1331 >seq5 Length=20976 Score = 578 bits (640), Expect = 4e-160 Identities = 693/939 (74%), Gaps = 2/939 (0%) Strand=Plus/Minus Query 84019 CCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGC 84078 |||||||||| ||||| || | | ||| ||||| ||||| | |||||| ||| | Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGAC 1351 Query 84079 TATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACAC 84138 |||| || | | || ||||| || || ||||| || || |||||||| ||||| | || Sbjct 1350 TATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATAC 1291 Query 84139 CCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAAC 84198 | | ||||| ||||| || || || || ||||||||||| | ||| ||||| | |||| Sbjct 1290 CTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 1231 Query 84199 GACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAA 84258 || |||||||| |||||| |||||||| | || || || || || ||||| || | Sbjct 1230 GAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 1171 Query 84259 CAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTT 84318 | |||||||||||||| || ||||||||||| | ||||| | || || |||||| Sbjct 1170 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTT 1111 Query 84319 CTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAG 84378 |||| ||||| | ||| | | |||||| || | ||||||||||| ||| |||||| | Sbjct 1110 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGG 1051 Query 84379 CTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTT 84438 || |||||||||||||| || || ||||||||||| || |||||||||||||| || | Sbjct 1050 AGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCT 991 Query 84439 CCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAG 84498 | |||||||| |||| |||| ||||||| || || | || || || ||||| ||||||| Sbjct 990 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAG 931 Query 84499 AGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAG 84558 | ||| ||||| |||| || || | | ||| ||||| | || |||||||| |||| Sbjct 930 AAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAG 871 Query 84559 CAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCAC 84618 | || || |||||| ||||| || |||||||| ||||| | ||||||||| |||| Sbjct 870 CGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCAC 811 Query 84619 GACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCAC 84678 |||||||||||| | | |||||| | |||||| | |||| |||| |||||| |||| Sbjct 810 GACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 751 Query 84679 CATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAA 84738 | || |||| |||||| || | |||||||||||| || || || || || | ||| | Sbjct 750 CGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGA 691 Query 84739 TAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAAC 84798 |||| ||| | |||| | |||||| || | || ||||||||||| | ||||| | Sbjct 690 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATC 631 Query 84799 CAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGA 84858 ||| || || ||||| ||||| |||||||| ||||| || ||| ||| ||| ||||| | Sbjct 630 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAA 571 Query 84859 TGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACA 84917 | || || || ||| || | | || || || ||||| | | || ||||| |||| Sbjct 570 TAAATACCGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATG 512 Query 84918 TAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 || | |||||| | ||| ||| | ||| | ||||||| Sbjct 511 TAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAAG 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571225320239880