Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq131 558 1e-154 seq5 509 5e-140 >seq131 Length=2205 Score = 558 bits (618), Expect = 1e-154 Identities = 724/997 (73%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||||||| || |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAG 5302 || ||||| |||||||| | | ||| |||||||| || | | || |||| Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTA--- 455 Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| || || || || || || || || || || || || |||||||| ||| || Sbjct 456 TCAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCT 515 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | ||| || | || || ||||||| ||| |||||||| ||||| ||| Sbjct 516 AAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGC 575 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 576 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 635 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 || ||||| |||||||||||||| |||||| | || || | || ||| | | Sbjct 636 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 695 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || ||||| | || | |||||| || | |||||||||||| ||| | | Sbjct 696 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAA 755 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| || || | |||||| || |||||||||||||| ||||| || Sbjct 756 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 815 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||| ||||| ||||||||||| || || ||||||||||||||| Sbjct 816 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 875 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCT 5782 |||||||| || || | ||||| | || || || | | || || ||||| || ||| Sbjct 876 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCT 935 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 |||||||| || |||||| |||||||| || | | | ||||||| ||||| | || Sbjct 936 GAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGA 995 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| |||| || | ||||| | |||||| | || | |||| || || || ||| Sbjct 996 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 1055 Query 5903 TTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960 ||||| | ||||||||| | ||| ||||||||||| || ||||| ||||| || || | Sbjct 1056 TTGTATAACCATTCATCAACGGAT--GCTGCTTCCCAAATTGGATAAAAGTGCAAACCGA 1113 Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 | || || | || | || ||| ||||| || || |||||||| || |||||||||| Sbjct 1114 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 1173 Query 6021 CTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATA 6080 | | || |||||||| || || || || || ||||| || || || | ||| || | | Sbjct 1174 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAA 1233 Query 6081 TAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACAT 6140 |||| ||| ||||||||| || | | || ||||| || ||||||||||| || | | Sbjct 1234 TAAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 1293 Query 6141 AGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || ||||| | ||| ||||| | ||||| |||||| Sbjct 1294 AAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 509 bits (564), Expect = 5e-140 Identities = 681/942 (72%), Gaps = 10/942 (1%) Strand=Plus/Minus Query 5241 CCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TA 5299 ||||||||||||| |||||||| | || ||| |||||||| || || || || | Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAA---TTACACGGCCTT 1354 Query 5300 GAGT--CAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGA 5357 || | |||| || || || ||||| || ||||| || || || || ||||||||| || Sbjct 1353 GACTATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGA 1294 Query 5358 TTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAAC 5417 | || | || || | ||| || | || || ||||||| ||| |||||||| ||||| Sbjct 1293 TACCTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACG 1234 Query 5418 TACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCG 5477 ||| ||||| || |||||||| |||||||| | || ||||| || |||||||| | Sbjct 1233 AACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGG 1174 Query 5478 CAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAA 5537 | || || ||||| |||||||||||||| |||||| | || || | || ||| | Sbjct 1173 CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCAT 1114 Query 5538 GCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACA 5597 | || ||||| | || | |||||| || | |||||||||||| ||| | Sbjct 1113 TTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATA 1054 Query 5598 AAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGT 5657 | || |||||||| ||||| || || | |||||| || || ||||||||||| |||| Sbjct 1053 GGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGT 994 Query 5658 GTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCAT 5717 | || ||||||||||| | ||| ||||| ||||||||| | || || ||||||||||||| Sbjct 993 GCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCAT 934 Query 5718 CACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCG 5777 || |||||||| || |||| ||||| | || || || | | || || ||||| | Sbjct 933 CAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAG 874 Query 5778 GTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATT 5837 | || |||||||| || |||||| |||||||| || | | | ||||||||||||| | Sbjct 873 GAGCGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACT 814 Query 5838 GGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTC 5897 || |||| ||||| || | ||||| | |||||| | || | |||| || || | Sbjct 813 CACGACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGAC 754 Query 5898 CTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAA 5955 | || ||||| | ||||||||| | ||| |||||||||||||| || || ||||| || Sbjct 753 CACCGTTGTATAACCATTCATCAACGGAT--GCTGCTTCCCAGATTGGGTAAAAGTGCAA 696 Query 5956 CCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAG 6015 || || || || | || | || ||| ||||| | || |||||||| || ||||| Sbjct 695 ACCGATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAG 636 Query 6016 AGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGC 6075 |||||| | || |||||||| || || || || || ||||| || ||||| | ||| || Sbjct 635 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGC 576 Query 6076 TAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCC 6135 | |||||| | | ||||||||| || | | || ||||| || ||||| ||||| || Sbjct 575 AATAATAAATACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 516 Query 6136 CACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || || ||||| | |||||| || | ||||| |||||| Sbjct 515 AATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152637344240646