Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq131 628 3e-175 seq5 565 3e-156 >seq131 Length=2205 Score = 628 bits (696), Expect = 3e-175 Identities = 713/955 (75%), Gaps = 6/955 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||| ||||| |||||||||||| ||| | | ||| | || || || | Sbjct 1290 TCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTGTTTATTA 1231 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 |||| |||||||| || |||||||| ||||| |||||||| | ||||||||| | || | Sbjct 1230 TTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1171 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | || || || || ||||| || ||||| ||||| | |||||| ||| ||||| | Sbjct 1170 CTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCG 1111 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | ||||| ||||| || |||||||||||| | ||||||| ||||| || ||||||| Sbjct 1110 GTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTG 1051 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | || | |||||| | | || | | ||| |||||| Sbjct 1050 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 991 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 ||||||| ||| || ||| | |||||||| |||||||| ||||||||| || || | Sbjct 990 AGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 931 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | || || |||||| |||||| |||| || | |||||||| ||| |||| Sbjct 930 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 871 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||| Sbjct 870 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 811 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||||| ||||| || || || ||| | || || || ||||||||||| ||||| | Sbjct 810 ACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 751 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||| ||||| | || |||||| | | ||||| ||||| || || Sbjct 750 TATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 691 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || || || | ||||| | ||||| ||||| ||||| ||||| || || || | Sbjct 690 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 631 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 | |||||||| || ||||| || ||||||||||| ||||| |||||||||||| |||| Sbjct 630 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTT 571 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||||| ||||| | ||||| || | |||||||||||||| | ||| Sbjct 570 CGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTA 511 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | ||||||||||||||||| || |||||||| || |||||||| || ||||| | Sbjct 510 TCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCC 451 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 ||| || || ||| ||||||||| ||||| | ||| | || || ||||||| Sbjct 450 AAGGCCGT---GTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGG 394 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||||||| || ||||||||||| |||||||| || || || ||||||| ||| Sbjct 393 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 565 bits (626), Expect = 3e-156 Identities = 665/898 (74%), Gaps = 6/898 (1%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||||||||| |||||||||||| ||| | | ||| | | || || ||| Sbjct 516 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCGGTATTTATTATT 575 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 576 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 635 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || ||||| || |||| ||||| | |||||| ||| ||||| ||| Sbjct 636 CTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGT 695 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || ||||||||||||||| | ||||||| ||||| || || ||||| Sbjct 696 TTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGT 755 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | | ||| |||||| || Sbjct 756 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAG 815 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 816 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCT 875 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || |||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 876 GTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 935 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||| ||||||||| |||| |||| | || ||||| || |||||| Sbjct 936 GGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 995 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 996 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 1055 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || |||||| | | ||||| ||||| || || | Sbjct 1056 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 1115 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 1116 GAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCC 1175 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || ||||||||||| ||||| |||||||||||| ||||| Sbjct 1176 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCG 1235 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 1236 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATC 1295 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 ||||||||||||||||| || || ||||| ||||||||||| || ||||| | Sbjct 1296 AGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 1355 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 || || || ||| ||||||||| |||||| | ||| | || |||||||||| Sbjct 1356 GGCCGT---GTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553038057420840