Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq131 553 2e-152 seq21 542 3e-149 seq5 489 2e-133 >seq131 Length=2205 Score = 553 bits (612), Expect = 2e-152 Identities = 722/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| ||||| || || | |||||| | || ||||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || ||||| || || |||| || || | || || ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | || ||||| ||||| ||||| ||| | || Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||| || ||||| ||| ||||| || || ||||||||||| || |||| Sbjct 971 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 912 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || |||| || | |||||||| ||| ||||| | ||||| || || || Sbjct 911 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 852 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 ||||| || ||||||| |||| |||| ||||| || |||||||||||||| ||||| || Sbjct 851 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 792 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || ||||| || || |||||||| ||||| || || || ||| || |||||||| Sbjct 791 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 732 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || || ||| | || | || || || |||| ||| || || | || Sbjct 731 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 672 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||||| || |||||||| ||||| || || || ||||| || || ||||| || || || Sbjct 671 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 612 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAAC-AGCAGAAGTCTTCACTTCTTCCTGG 163669 || ||||||||||||||||| ||||||||| || || | ||||||||||| | Sbjct 611 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGT-TACACTTCTTCCTAG 553 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || |||||||| || || |||||||| ||||| | || | || || |||||||||| Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 |||| || |||||||| || ||||| || | ||||| | || || ||||| | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 ||||||| || | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATG 373 Query 163850 CACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 | || |||||||| || ||||| ||||||| ||| Sbjct 372 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq21 Length=7990 Score = 542 bits (600), Expect = 3e-149 Identities = 726/1007 (72%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || || |||||||| || ||||| || || | || || Sbjct 1056 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 1115 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 1116 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 1175 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || |||||||| | || ||||||| | ||||| ||| || | ||||| || || Sbjct 1176 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAGTT 1235 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 1236 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAA 1295 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || |||| || ||||| ||| | || || || |||| ||| || ||||| || || Sbjct 1296 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGC 1355 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977 || || | ||||| ||||||||| | || || |||||||| || || ||| | | | Sbjct 1356 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAAT-T 1414 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| || || |||||||| || |||||||||||||| || ||||| Sbjct 1415 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 1474 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || ||||| || ||||| ||||||| || || || ||||| || ||||| || Sbjct 1475 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 1534 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||||||||| | | || |||||||||| || || ||||| || ||||| || ||||| Sbjct 1535 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 1594 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| ||||| ||| | ||||| | || ||||||| ||||||||||| | || || Sbjct 1595 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 1654 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 |||||||| |||| || ||||| || |||||||| ||| || ||| | | || Sbjct 1655 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 1714 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| || ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 1715 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 1774 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | || Sbjct 1775 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 1834 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| || |||| | | ||| | || || ||||| ||||| ||||| || Sbjct 1835 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 1894 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| |||||| || | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 1895 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 1954 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || ||||| || ||||| | || |||||| |||| || ||||| || |||||||| Sbjct 1955 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 2014 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 2015 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 2061 >seq5 Length=20976 Score = 489 bits (542), Expect = 2e-133 Identities = 673/938 (72%), Gaps = 2/938 (0%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| |||| ||| | ||||| || || | || |||||||| || || Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| || || || || | |||||| | |||||||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCC 592 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || ||||| || || |||| || || | || || ||||| Sbjct 593 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 652 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || |||| ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 653 TATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 712 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 713 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 772 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | | || ||||| ||||| ||||||||| | || Sbjct 773 TCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 832 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||| || ||||| ||| ||||| || || ||||||||||| || |||| Sbjct 833 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGC 892 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || |||| || |||||||||| ||| ||||| | ||||| || || || Sbjct 893 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 952 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 | ||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||||| Sbjct 953 TTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1012 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || ||||| || || |||||||| ||||| || || || ||| || |||||||| Sbjct 1013 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1072 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || || ||| | || | || || || |||| ||| || || | || Sbjct 1073 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 1132 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||| | || |||||||| ||||| || || || ||||| || || ||||| || || || Sbjct 1133 TTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 1192 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGC 163670 || ||||||||||||||||| ||||||||| | | ||||||||||| || Sbjct 1193 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 1252 Query 163671 AGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAA 163730 || |||||||| || || |||||||| ||||| | || | ||||| ||||||||||| Sbjct 1253 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAA 1312 Query 163731 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACAC 163790 ||| || || ||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 1313 CCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 1372 Query 163791 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGG 163828 |||||| || | | ||||| ||| || ||||||| Sbjct 1373 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563162001748680