Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq131 695 0.0 seq5 675 0.0 seq21 544 9e-150 seq6 82.4 8e-11 >seq131 Length=2205 Score = 695 bits (770), Expect = 0.0 Identities = 753/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || || ||||| ||||| ||||| | || ||||| || || || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || | | ||||| || ||||||||| ||| ||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACTTC--TGTGTTT-ATTATTGCCTTCATTGCCGCT 1214 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || ||||||||||| || |||| || || | || |||||| Sbjct 1213 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAC 1154 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 || || ||||| ||||| |||| ||| ||||| ||||||||| ||||||| || || Sbjct 1153 AATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCA 1094 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 || |||||||||||| | || |||||| | ||||| |||||||||| |||| || Sbjct 1093 ATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATT 1034 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | |||||| | |||| | | ||||||||||||||||||||| ||| || | Sbjct 1033 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTC 974 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 |||||||| ||||| ||||||||| || ||||| || |||||||| || || || | Sbjct 973 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACC 914 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| || |||| || | |||||||| ||| ||||||| |||||||| || Sbjct 913 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 854 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 || |||||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||| Sbjct 853 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAT 794 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || ||| | |||||||| ||||| || |||||||| || |||||||| ||||| Sbjct 793 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 734 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| |||| || ||| || | | |||||||| ||||| || || || | Sbjct 733 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 674 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||||| ||||||||||| ||||| || || || ||||| || || || || || || Sbjct 673 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 614 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 || || |||| |||||||| ||| ||||||||||| || ||| | ||||||||||| Sbjct 613 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTA 554 Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 |||||||||||||| || || |||||||||||||| | || | || || ||||||||| Sbjct 553 GCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTC 494 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| || ||||| ||| | |||||||| || || || || || Sbjct 493 AACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAAT 434 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || ||||| || || ||||||||||| || || |||||||| ||||| || || ||| Sbjct 433 ACTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAAT 374 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||| ||||||||||| || || ||||||| ||| Sbjct 373 GCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 675 bits (748), Expect = 0.0 Identities = 714/938 (76%), Gaps = 2/938 (0%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | ||||||||||| ||||| ||||| |||| |||||||| || || Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | || || || ||||||||| ||| |||||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCC 592 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || ||||||||||| || |||| || || | || |||||||| Sbjct 593 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 652 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || |||| ||||| |||| ||| ||||| ||||||||| ||||||| ||||| || Sbjct 653 TATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 712 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 ||||||||||||| | || |||||| | |||||||||||||||| |||| |||| Sbjct 713 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 772 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | |||||||||||||||||||||||||| || ||| Sbjct 773 TCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 832 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 |||||| ||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 833 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGC 892 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| || |||| || |||||||||| ||| ||||||| |||||||| || || Sbjct 893 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 952 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 | |||||| ||||||| |||| |||| ||||| || ||||||||||| || |||||||| Sbjct 953 TTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1012 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 || || ||| | |||||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 1013 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1072 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| |||| || ||| || | | |||||||| ||||| || || || | || Sbjct 1073 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 1132 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 ||| | ||||||||||| ||||| || || || ||||| || || || || || || || Sbjct 1133 TTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 1192 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 || |||| |||||||| ||| ||||||||||| || ||| | ||||||||||| || Sbjct 1193 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 1252 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 |||||||||||| || || |||||||||||||| | || | ||||| ||||||||||| Sbjct 1253 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAA 1312 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 ||| ||||| ||||| |||||||| ||| | ||||||||||| || || || || || Sbjct 1313 CCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 1372 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGG 161812 ||||| || | ||||||||||| ||||| |||| Sbjct 1373 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 544 bits (602), Expect = 9e-150 Identities = 734/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||||||||||||||| || ||||| || Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || |||||||| || || | || ||||||||| | | ||| || || ||||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCT 1221 Query 162296 T-ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 | || || |||||||||||||| || | | | | |||||| | || | ||||||| Sbjct 1222 TAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGG 1281 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 ||||||| | ||||| || || | || ||||| ||| | || || || |||||||||| Sbjct 1282 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTG 1341 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 162474 | || || || || || |||| ||| |||||||||||| | || || ||||| || || | Sbjct 1342 TTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCC 1401 Query 162475 GA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTC 162533 || || || | | || ||||| ||||| || || ||||| || || |||||||| || Sbjct 1402 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 1460 Query 162534 GTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC 162593 ||| ||| || || || ||||| | || || || |||||||| ||||| || Sbjct 1461 GTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTT 1520 Query 162594 GGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTA 162653 || || ||||| || || ||||| | ||||| | ||||| || ||||| |||||||| Sbjct 1521 GGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTG 1580 Query 162654 AATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATT 162713 || || ||||| |||||||| || || ||| | | || | ||| ||||| | |||||| Sbjct 1581 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 1640 Query 162714 CATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAA 162773 ||||| | || || |||||||| | | |||||||| || ||||| || ||| Sbjct 1641 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGT 1700 Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| ||||| |||||||||||||| ||| Sbjct 1701 GCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGG 1760 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || || |||||||| || || |||||||| |||||||||||| | ||| Sbjct 1761 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 1820 Query 162894 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTT 162953 || || || | ||| | |||| ||| || | || | | || | || || || || Sbjct 1821 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTA 1880 Query 162954 CGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACG 163013 ||||| |||||||| || ||||| ||| |||| || || ||||| ||||| |||||||| Sbjct 1881 CGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACT 1940 Query 163014 TTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGAC 163073 ||||| || || || ||||| | || ||||| |||| || ||| | || | || Sbjct 1941 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 2000 Query 163074 CAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||||||| ||| || | |||||||| ||||| | ||| | || |||||||| Sbjct 2001 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 >seq6 Length=18257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 921 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 862 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 861 CCTGTCATCCCTACCTAT 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547700908514760