Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq131 549 6e-152 seq5 509 5e-140 >seq131 Length=2205 Score = 549 bits (608), Expect = 6e-152 Identities = 719/989 (73%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||||||||||||||| || ||||||||||| | || ||||| Sbjct 347 AGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCCAGGTT 406 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 407 AGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTACA-- 464 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||| || ||||| ||||| || || || |||||||| ||| || | || || Sbjct 465 -GATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAGT 523 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGT 18069 | ||| || | || ||||||||||| | |||||| |||| || || | |||| Sbjct 524 GAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACGCGAGTTGT 582 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || |||||||| |||||||| | || ||||| || |||||||| || || ||||||| Sbjct 583 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 642 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||| ||||| || ||| | || || | || ||| ||| || || |||| Sbjct 643 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 702 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | || || | ||||| || | || ||||||||| ||||| | || |||| Sbjct 703 CCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 762 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || || || || | ||| || || |||||||||||||| ||||| || || |||| Sbjct 763 ATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGA 822 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| | |||||| ||||||||||| ||| || ||||||||||||||||| ||||| | Sbjct 823 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 882 Query 18370 CTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 |||| |||| || || | | ||||| || | | |||||||| || || || ||||| Sbjct 883 CTTGACCAATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAATAT 941 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || |||||||| || | ||||||| ||||| | || |||||| Sbjct 942 GCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATG 1001 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| |||| ||| || || || || ||| Sbjct 1002 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTAT 1061 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || ||| |||||||| ||||| || ||||| | |||||| || | Sbjct 1062 AACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCTGCA 1121 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || ||||| || || |||||||| || |||| | ||| || ||| Sbjct 1122 GAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 1181 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || |||||||| |||| || ||||| | ||| | Sbjct 1182 GGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACACA 1241 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 1242 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG 1301 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | ||||| || | ||||| ||| || Sbjct 1302 TTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 509 bits (564), Expect = 5e-140 Identities = 679/937 (72%), Gaps = 10/937 (1%) Strand=Plus/Minus Query 17886 CCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCT 17942 ||||||||||| | ||||| | |||||||| ||| | || | ||| | | | Sbjct 1405 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 1346 Query 17943 GCTACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCC 18002 ||||| ||||||||||| ||||| ||||| || || || ||||||||| ||| || Sbjct 1345 ACTACA---GATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATACCT 1289 Query 18003 ATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTG 18062 | || || | ||| || | || ||||||||||| | |||||| |||| || | Sbjct 1288 AAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACG 1230 Query 18063 CTA-TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 18121 | ||||| || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 1229 AGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 1170 Query 18122 AATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTC 18181 |||||||| || ||||| ||||| || ||| | || || | || ||| ||| || Sbjct 1169 GATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTTC 1110 Query 18182 AGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241 || ||||| || || | ||||| || | || ||||||||| ||||| | Sbjct 1109 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGA 1050 Query 18242 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 1049 GCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 990 Query 18302 GGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 || |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| Sbjct 989 AGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAGA 930 Query 18362 GAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTG 18420 ||||| ||||| || | || || | | ||||| || | | |||||||| || || | Sbjct 929 AAAACTTCCTTGACCGATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAG 871 Query 18421 CGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTC 18480 ||||||| |||||| |||||| || |||||||| || | ||||||||||||| | | Sbjct 870 CGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCAC 811 Query 18481 GTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTC 18540 | |||||||||| || | || | | ||||| | ||||| |||| ||| || || | Sbjct 810 GACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 751 Query 18541 CGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 18600 |||| |||||||| || || | || ||| ||||||||||||||||| ||||| | ||||| Sbjct 750 CGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGA 691 Query 18601 TTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTC 18660 | || ||| | || | || || ||||| | || |||||||| || |||| | || Sbjct 690 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATC 631 Query 18661 CTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA 18720 | || ||||| |||||||||||||| || || || ||||||||||||| || ||||| | Sbjct 630 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAA 571 Query 18721 AAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGT 18780 |||| | | || |||||| || | | ||||||||| | || || ||||| || | || Sbjct 570 TAAATACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGT 511 Query 18781 AGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | || ||||| | || || || | ||||| ||| || Sbjct 510 AAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151306251118534