Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq131 580 1e-160 seq21 556 2e-153 seq5 524 1e-143 >seq131 Length=2205 Score = 580 bits (642), Expect = 1e-160 Identities = 706/965 (73%), Gaps = 8/965 (1%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| || || || |||||||| ||||| ||||| || ||||| ||||||||||||| Sbjct 343 CAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCCA 402 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||||| || || ||||| || || | ||||| || || | ||||| | Sbjct 403 GGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTA 462 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || ||||| || ||||| || || |||||||| ||||| || || | ||| | || | Sbjct 463 CAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAG 522 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 ||||||||||||||||||| || | ||||||| Sbjct 523 TGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAGTTGT 582 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || |||||||||||||| || || || |||||||||||||||||||| || | Sbjct 583 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 642 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| ||||| ||||||| | || ||||||| |||| || || | Sbjct 643 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 702 Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 | | || | | | || | || |||| ||||| |||||||||||||| || ||||| ||| Sbjct 703 CCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCCG 761 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || ||||| ||||| | |||||| || || ||||| || ||||| || || || ||| Sbjct 762 AATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGG 821 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | |||| ||||||| || || ||||| || | ||||||| |||| || || Sbjct 822 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTT 881 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||||| ||||||| |||||| || |||| ||||| ||||||||||| || ||| Sbjct 882 CCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATAT 941 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| || ||||| ||||||||| | | ||||||||||| ||||| Sbjct 942 GCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATG 1001 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | | |||| | |||||| | || | |||| |||||||||| || || Sbjct 1002 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTAT 1061 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948 | ||| ||||||| ||||||||||||||||| ||||| ||||| | ||| || || || Sbjct 1062 AACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGC--TG 1119 Query 103949 GAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 || || |||| || ||||| ||||| || ||||| ||||| | || || |||| | Sbjct 1120 CAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAA 1179 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | ||||||||||| || || ||||| || ||||| || || | ||| |||| || || Sbjct 1180 CAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACA 1239 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | ||| | || |||||||||| ||||| ||||| || | || ||| Sbjct 1240 CAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGA 1298 Query 104126 CGGTT 104130 ||||| Sbjct 1299 CGGTT 1303 >seq21 Length=7990 Score = 556 bits (616), Expect = 2e-153 Identities = 731/1013 (72%), Gaps = 0/1013 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 2056 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 1997 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| || || | |||||| || ||||| || || || |||||||| ||| Sbjct 1996 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAGTC 1937 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | || || || || || ||||| || ||||| ||| Sbjct 1936 TCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCACGTAGG 1877 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || | ||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 1876 TTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 1817 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 1816 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 1757 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || ||||| ||||| || |||||| |||| || | | || || Sbjct 1756 AAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAGCACGA 1697 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 1696 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 1637 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | |||| || | |||| | ||| ||||| ||||||||||| |||||||| ||| Sbjct 1636 GCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGC 1577 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | |||||||||||| ||||| |||||||| Sbjct 1576 GTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACACCAAAA 1517 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 1516 CTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAACAAAA 1457 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | || Sbjct 1456 ACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGGGCA 1397 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | ||| |||||||| | ||||||||| || || |||| || || || ||||| |||||| Sbjct 1396 AGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCAACAAAA 1337 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 1336 GTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 1277 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || || ||||| | |||| Sbjct 1276 AGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTTAAGAAA 1217 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 ||| ||||| | || | || | ||| ||||||||||| ||||| |||| || Sbjct 1216 TTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACAAAGGTT 1157 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669 || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| || ||| Sbjct 1156 GTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCGGAC 1097 Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 1096 CAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1044 >seq5 Length=20976 Score = 524 bits (580), Expect = 1e-143 Identities = 663/914 (73%), Gaps = 8/914 (1%) Strand=Plus/Minus Query 103221 CCATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGAC 103280 ||||||| || ||| ||||||| | || ||||| || || | ||||| || |||| Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGAC 1351 Query 103281 CATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACAC 103340 ||||| | || |||||||| ||||| || || |||||||| ||||| ||||| | || Sbjct 1350 TATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATAC 1291 Query 103341 CAAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 103400 | | || |||||||||||||||||||| || Sbjct 1290 CTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 1231 Query 103401 GGGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTA 103460 | ||||||||||| || |||||||||||||| || || || |||||||||||||||| Sbjct 1230 GAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 1171 Query 103461 CGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTT 103520 |||| || || || ||||||||||| ||||| | ||||| | || ||||||| ||| Sbjct 1170 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTT 1111 Query 103521 CAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGT 103579 | || || || | || | | | || | || |||| ||||| |||||||||||||| || Sbjct 1110 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGG 1052 Query 103580 GAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGT 103639 || || ||||| || ||||| ||||| | |||||| || |||||||| || ||||| || Sbjct 1051 GAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGC 992 Query 103640 TCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCG 103699 || || ||||| || | |||| ||||||| || || |||| || | ||||||| |||| Sbjct 991 TCAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCA 932 Query 103700 GAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGA 103759 || || |||||||| | ||||||| |||||| || |||| ||||| ||||||||| Sbjct 931 GAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGA 872 Query 103760 GCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCA 103819 || || ||||| ||| ||||| || ||||| ||||||||| | | |||||||||| Sbjct 871 GCGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCA 812 Query 103820 CGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCA 103879 || ||||| || | | | |||| | |||||| | || | |||| |||||||| Sbjct 811 CGACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCA 752 Query 103880 CCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCA 103939 ||||| || | ||| ||||||| |||||||||||||| || || || ||||| | ||| Sbjct 751 CCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCG 692 Query 103940 ATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTG 103997 || || || || || |||| || ||||| |||| || ||||| ||||| | || | Sbjct 691 ATAGC--TGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAG 634 Query 103998 AACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAA 104057 | |||| || ||||||||||| || || ||||| || ||||| || || | ||| |||| Sbjct 633 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAA 574 Query 104058 CGATGAAG-CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCA 104116 || || | || | |||| | ||| | || |||||||||| ||||||||||| ||| Sbjct 573 TAATAAATACCGAAG-TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCA 515 Query 104117 ACATAGAGACGGTT 104130 | || |||||||| Sbjct 514 ATGTAAAGACGGTT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633460060181880