Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq131 545 3e-150 seq5 470 2e-127 seq21 403 2e-107 >seq131 Length=2205 Score = 545 bits (604), Expect = 3e-150 Identities = 722/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| ||||| ||||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCG---TTAGC- 124155 |||| ||| || | ||| | || |||| |||| || | | || || || || Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGT----ATTAATTACACGGCCTTGGCT 454 Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || ||||||||||| ||||||||||| | |||||||||||| || | |||||| Sbjct 455 ATCAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACC 514 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | || || ||||| || | |||||||||||||| | | Sbjct 515 TAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 574 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 ||||||||||| |||||| |||||||| | || ||||| ||||| || || ||||| Sbjct 575 CGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 634 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 || || || |||||||| ||||| ||||| | ||||| | || || || | || Sbjct 635 GATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 694 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 ||| ||||| ||||| | | ||| || || | ||||||||||| || ||||| || Sbjct 695 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGA 754 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || ||||| | || ||||| ||| |||||| || |||||||| || ||||| ||||| Sbjct 755 ACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTC 814 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 || ||||| || | ||| |||||||||||||| || || || || |||||||||||||| Sbjct 815 AGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 874 Query 124576 GAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGC 124635 || || ||||||| |||||| | ||||| |||||| ||||| | || || || Sbjct 875 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGC 934 Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCT 124695 |||||| |||||| |||||||| ||||| || | | | | || ||||||| | Sbjct 935 TGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACG 994 Query 124696 TCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||||||| | | ||||| | |||||| | || | | | |||||||||||| Sbjct 995 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 1054 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 ||| || |||||||||||||| | |||||||||||| ||||| || ||||| | ||||| Sbjct 1055 ATTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGAT 1114 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 ||| || | |||| || ||||| ||||| || ||||| || || | | ||| || Sbjct 1115 AGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCC 1174 Query 124876 CGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGAT 124935 | || ||||| | || || || ||||| || ||||| || ||||| || |||| || Sbjct 1175 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAAT 1234 Query 124936 GAAACA-TGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACAT 124994 ||||| | | ||| || | |||| || ||||| | |||||||||||| || | | Sbjct 1235 -AAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 1293 Query 124995 AAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||| | || |||| ||| | |||||| Sbjct 1294 AAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 470 bits (520), Expect = 2e-127 Identities = 632/877 (72%), Gaps = 2/877 (0%) Strand=Plus/Minus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || |||||||| || ||||| ||||| | |||||||||||| |||| |||||| Sbjct 1349 ATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATACC 1290 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | || || ||||| || | |||||||||||||| | | Sbjct 1289 TAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 1230 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 ||||||||||| |||||| |||||||| | || ||||| ||||| || || ||||| Sbjct 1229 AGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 1170 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 || || || |||||||| ||||| ||||| | ||||| | || || || | || Sbjct 1169 GATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTTC 1110 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 ||| ||||| ||||| | | ||| || || | ||||||||||| || ||||| || Sbjct 1109 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGA 1050 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || ||||| | || ||||| ||| |||||| || || ||||| || ||||| ||||| Sbjct 1049 GCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 990 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 || ||||| || | ||| |||||||||||||| | || || || |||||||||||||| Sbjct 989 AGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAGA 930 Query 124576 GAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGC 124635 || || ||||| | |||||| | ||||| |||||| ||||| | || || || Sbjct 929 AAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGC 870 Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCT 124695 ||||| |||||| |||||||| ||||| || | | | | |||||||||| | Sbjct 869 GGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 810 Query 124696 TCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||||||| | | | ||||| | |||||| | || | | | |||||||||||| Sbjct 809 ACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 750 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 || || |||||||||||||| | ||||||||||||||||||||| ||||| | ||||| Sbjct 749 GTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGAT 690 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 ||| || | |||| || ||||| |||| || ||||| || || | | ||| || Sbjct 689 AGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATCC 630 Query 124876 CGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGAT 124935 | || ||||| | || || || ||||| || ||||| || ||||| || |||| || Sbjct 629 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAAT 570 Query 124936 GAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATA 124995 || | | ||| || | |||| || ||||| | |||||| ||||| |||| || Sbjct 569 AAATACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTA 510 Query 124996 AATTCTGTTGTTTGTTGAT-GTTACCCACTCACAGAA 125031 || | ||| || | || | |||| ||| | |||||| Sbjct 509 AAGACGGTT-TTCGGTGCTGGTTATCCAGTTACAGAA 474 >seq21 Length=7990 Score = 403 bits (446), Expect = 2e-107 Identities = 713/1038 (69%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 2060 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 2001 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 2000 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAA 1941 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || ||||| || |||||||| || | Sbjct 1940 AGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCACG 1881 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || | ||| || | || | || |||| | ||| | || || || Sbjct 1880 TAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 1821 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 1820 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 1761 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | |||||| || | ||| ||| |||||||| | || || || | || || Sbjct 1760 CCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAGC 1701 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | |||| |||| ||| | || ||| || ||||| | || || Sbjct 1700 AC-GAAA--TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 1662 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| || || | || | || || ||||| Sbjct 1661 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAAC 1602 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| || || || || ||||| | || | ||| | Sbjct 1601 TCCCATCATATGAAATGGGTTCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAA 1542 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 | ||| || ||||| ||||| || ||||| |||||||||| ||| |||||||| Sbjct 1541 TCTAAATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGG 1482 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || |||||||||||| ||| || || Sbjct 1481 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATA 1422 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | ||||||||| | | |||||||||||| ||||| Sbjct 1421 AGGTCGCAATTGAACAGATCGGGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCC 1362 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 1361 AAAAGCGCCATGCAGAGCAACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAA 1302 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 1301 ATCTCCTTGTGCTTCAGGACCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGG 1242 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| ||||||||||| || || || | ||| ||| || | ||||| Sbjct 1241 AGTAGAAACTGCGGCTGTTAAGAAATTACAGCCTTCCAAATAGGAACTGGCCAACCCATG 1182 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 1181 GGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGC 1122 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||| ||||| |||| || || ||||| || ||| |||||| Sbjct 1121 ACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCA 1062 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 1061 GTCATCCATAATATCAAA 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578949467397720