Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5 574 6e-159 seq131 567 9e-157 seq21 509 2e-139 >seq5 Length=20976 Score = 574 bits (636), Expect = 6e-159 Identities = 691/934 (74%), Gaps = 4/934 (0%) Strand=Plus/Minus Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| ||||||||||| | || |||||||| || | ||||| || || |||| Sbjct 1405 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 1346 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||||| || ||||| ||||| || || || ||||| ||||| ||| | ||| | Sbjct 1345 ACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATACCTAAA 1286 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || ||||||||||| || || || ||||| ||||| ||||||||||| || ||||| ||| Sbjct 1285 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAG 1226 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||| |||||||||||||||||| || || || || ||||| || || ||||| Sbjct 1225 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 1166 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || || || ||||| ||||||||||| | ||||| | || || ||| |||| || Sbjct 1165 TTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTTCTGTG 1106 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || | || | ||| || |||| || ||||||||| ||| || || || Sbjct 1105 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 1046 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| || || | |||||| || |||||||||||||| ||||| || ||| Sbjct 1045 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 986 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||| |||| |||| ||||||||| | || || ||||||||| |||| || ||| Sbjct 985 TGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAGAAAAA 926 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||||| || |||| | ||| || || | ||||| || || ||||| ||| Sbjct 925 CTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCGGAA 866 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 ||||| ||| ||||| || |||||||| | ||| | |||||||||||||| ||| Sbjct 865 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 806 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 || |||| | | || | | |||||| | || | |||| ||||||||||||| Sbjct 805 ATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 746 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||| ||||| | ||||||||||||||||||||||| ||||| | |||||| || Sbjct 745 TATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCT 686 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 ||| | || | || ||||| || | || ||||| || || | || || |||| | Sbjct 685 GCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATCCAGAA 626 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAG 27624 || |||||||||||||| |||||||| || || || || || ||||| || | ||| || Sbjct 625 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 566 Query 27625 -CAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 | || |||||| | || | || |||||||||| ||||||||||| |||| || | Sbjct 565 ACCGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAG 507 Query 27684 ACGGTTGTTAGTTGAT-GTCACCCACTCACAGAA 27716 |||||| || | || | || | ||| | |||||| Sbjct 506 ACGGTT-TTCGGTGCTGGTTATCCAGTTACAGAA 474 >seq131 Length=2205 Score = 567 bits (628), Expect = 9e-157 Identities = 707/966 (73%), Gaps = 2/966 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||||||| ||||| | || || ||||| || || | ||| || || || || | Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 || || ||||||||||| || || |||||||| || | ||||| || || |||| Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 458 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||||| || || || |||||||| || || ||||| ||||| || | ||| | Sbjct 459 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 518 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || ||||||||||| || || || ||||| ||||| ||||||||||| || ||||| ||| Sbjct 519 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 578 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||| |||||||||||||||||| || || || || ||||| || || ||||| Sbjct 579 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 638 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || || || ||||| ||||||||||| | ||||| | || || ||| |||| || Sbjct 639 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 698 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || | || | ||| || |||| || ||||||||| ||| || || || Sbjct 699 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 758 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || ||| Sbjct 759 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 818 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||| |||| |||| ||||||||||| || || ||||||||| |||| || ||| Sbjct 819 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 878 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||| | || |||| | ||| || || | ||||| || || ||||| ||| Sbjct 879 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 938 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 ||||| ||| ||||| || |||||||| | ||| | || ||||||||||| ||| Sbjct 939 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 998 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 || ||| | | || | | |||||| | || | |||| |||||||||| || Sbjct 999 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 1058 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||| ||||| | |||||||||||||| ||||| || ||||| | |||||| || Sbjct 1059 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 1118 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 ||| | || | || ||||| || || || ||||| || || | || || |||| | Sbjct 1119 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 1178 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA- 27623 || |||||||||||||| |||||||| || || || || || ||||| || | ||| || Sbjct 1179 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 1238 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 |||| |||||| | || | || |||||||||| ||||| ||||| || | || | Sbjct 1239 ACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAG 1297 Query 27684 ACGGTT 27689 |||||| Sbjct 1298 ACGGTT 1303 >seq21 Length=7990 Score = 509 bits (564), Expect = 2e-139 Identities = 728/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 2061 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 2002 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| | || | || | ||| || | ||||||||| ||||||| Sbjct 2001 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 1942 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || || ||||| || ||| || || || || |||| Sbjct 1941 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCAC 1882 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || || || | || | | |||| || | | ||| | ||| | || || | Sbjct 1881 GTAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 1822 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 1821 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 1762 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| |||||||| || ||| | ||||| | | || | Sbjct 1761 ACCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAG 1702 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | ||| || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 1701 CACGAAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 1642 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || | || | |||| || ||| ||||||||||||||||| || |||| Sbjct 1641 GAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 1582 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | |||||||| |||||||| || || | ||||| | ||| || || || || || |||| Sbjct 1581 TCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACAC 1522 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| || |||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 1521 CAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAA 1462 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| || ||||| || || || ||||| || || || | | || ||| Sbjct 1461 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGAT 1403 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || || ||||| ||||||||||| |||||||| ||| |||| || || || |||||| Sbjct 1402 CGGGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCA 1343 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 1342 ACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 1283 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-T 24223 ||||| |||| | | |||||| | | | | |||||| || || || || || | | Sbjct 1282 CCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTT 1223 Query 24224 AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAAC 24283 |||||| ||| || || | ||||||||| || | |||||||| ||||| || || Sbjct 1222 AAGAAA-TTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTAC 1164 Query 24284 AAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAG 24343 ||| | ||| || || | |||||| || | || | ||| ||| |||| || | || Sbjct 1163 AAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAG 1104 Query 24344 TCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 || |||||||| ||||| || || || |||| | |||||| |||| || ||||| Sbjct 1103 ACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665438157404520