Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq131 547 8e-151 seq5 464 8e-126 >seq131 Length=2205 Score = 547 bits (606), Expect = 8e-151 Identities = 718/988 (73%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| |||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| ||| ||| | || | || Sbjct 399 CCCAGGTTAGCACGGTTGATAATA--TCAGCCCAAGTATTAATTACACGGCCTTGGCTAT 456 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || ||||||||||| || || || || ||||| |||||||| || | ||||| | Sbjct 457 CAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTA 516 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA--GACTTCT 8117 || ||| ||||| | || || || || | | ||| ||||||||||| | || | Sbjct 517 AAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCG 576 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || | Sbjct 577 A--GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 633 Query 8177 CAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTT 8236 | |||||||| || ||||| |||||||| || | ||||| | || ||| || | || Sbjct 634 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTT 693 Query 8237 CAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTG 8296 | || || || ||||| | | ||| || || || ||||| |||||||||||||| || | Sbjct 694 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGG 753 Query 8297 ATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCT 8356 | || ||||| | ||| ||||| ||| ||| || || ||||||||||| ||||| |||| Sbjct 754 AACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCT 813 Query 8357 CTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAG 8416 | || |||||||| | ||||||||| || ||||||||||| ||||||||||| ||||||| Sbjct 814 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAG 873 Query 8417 AGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAG 8476 | || || ||||||| ||| || | ||||| || ||| |||||| | || |||| Sbjct 874 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAG 933 Query 8477 CACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTC 8536 | |||||| ||| ||||| |||| |||||| | ||| | | |||||||| | Sbjct 934 CTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCAC 993 Query 8537 TACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596 |||||||||| || | |||| | |||||| | | || | | ||| ||||| | Sbjct 994 GACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 1053 Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656 | || || ||||| ||||| | | || ||||||||||| ||||| ||||| || || | Sbjct 1054 CATTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGA 1113 Query 8657 TAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAAC 8716 |||| |||| |||| | ||||| ||||| || |||||||| || | | || | Sbjct 1114 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 1173 Query 8717 CTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGA 8776 | | |||||||||||||||||| || ||||| || || ||||| ||||| || || | | Sbjct 1174 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAA 1233 Query 8777 TAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACAT 8836 |||| || || || | || ||| ||| ||||| | ||| |||||||| |||| | Sbjct 1234 TAAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 1293 Query 8837 AAAGTCTGTTGTTTGTACTTGTAACCCA 8864 |||| | ||| | ||||| || | ||| Sbjct 1294 AAAGACGGTTTTCGGTACTAGTTATCCA 1321 >seq5 Length=20976 Score = 464 bits (514), Expect = 8e-126 Identities = 662/929 (71%), Gaps = 2/929 (0%) Strand=Plus/Minus Query 7937 CCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAA 7996 ||||||| | ||| || | ||| | | ||| |||| ||| ||| | || | | Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGAC 1351 Query 7997 CATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATAC 8056 |||||| || |||||||| || || || || || ||||| |||||||| |||| |||| Sbjct 1350 TATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATAC 1291 Query 8057 CCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTC 8116 | | || ||| ||||| | || || || || | | ||| ||||||||||| | | Sbjct 1290 CTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 1231 Query 8117 TACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCA 8175 | |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || Sbjct 1230 GAGAGTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCT 1172 Query 8176 ACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCT 8235 || |||||||| || ||||| |||||||| || | ||||| | || ||| || | | Sbjct 1171 ACGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTT 1112 Query 8236 TCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGT 8295 || || || || ||||| | | ||| || || || ||||| |||||||||||||| || Sbjct 1111 TCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGG 1052 Query 8296 GATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGC 8355 || || ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||| Sbjct 1051 GAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGC 992 Query 8356 TCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCA 8415 || || |||||||| | ||||||||| || |||||| |||| ||||||||||| |||||| Sbjct 991 TCAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCA 932 Query 8416 GAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGA 8475 || || || ||||| | ||| || | ||||| || ||| |||||| | || ||| Sbjct 931 GAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGA 872 Query 8476 GCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGT 8535 || |||||| ||| ||||| |||| |||||| | ||| | | ||||||| Sbjct 871 GCGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCA 812 Query 8536 CTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCT 8595 | ||||||||||| || | |||| | |||||| | | || | | ||| ||||| Sbjct 811 CGACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCA 752 Query 8596 CCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCA 8655 ||||| || ||||| ||||| | | || |||||||| || || || ||||| || || Sbjct 751 CCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCG 692 Query 8656 ATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAA 8715 ||||| |||| |||| | ||||| |||| || |||||||| || | | || Sbjct 691 ATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGAT 632 Query 8716 CCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACG 8775 || | |||||||||||||||||| || ||||| || || ||||||||||| || || | Sbjct 631 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATA 572 Query 8776 ATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACA 8835 ||||| | || || | || ||| ||| ||||| | ||| || ||||| || | Sbjct 571 ATAAATACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATG 512 Query 8836 TAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 511 TAAAGACGGTTTTCGGTGCTGGTTATCCA 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615810351928920