Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq131 632 2e-176 seq5 578 4e-160 seq21 509 2e-139 seq12 98.7 1e-15 seq10 93.3 5e-14 >seq131 Length=2205 Score = 632 bits (700), Expect = 2e-176 Identities = 738/994 (74%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || || || | |||||||| || |||| ||||||||| | Sbjct 1331 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 1272 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| |||| || || | |||||||| || |||| Sbjct 1271 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 1213 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || |||||||| || |||| ||||| | || || |||| Sbjct 1212 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1153 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| | Sbjct 1152 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 1093 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || |||||||||| |||| ||| Sbjct 1092 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 1033 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | |||||||||||||||||||| || || || Sbjct 1032 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 973 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| |||||||| || ||||| |||||| || ||||| || || || ||||| | | Sbjct 972 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 913 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || | |||||||| ||||| ||||||| ||||| || |||| Sbjct 912 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 853 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | || || || ||||||| |||| | || ||||| ||||||||||| || || ||||||| Sbjct 852 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 793 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | ||||| ||||| ||||| || || | || ||||||||||| | Sbjct 792 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 733 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 732 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 673 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 672 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 613 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| ||||||||||| || || || ||||||||||| | Sbjct 612 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 553 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||||||| || | || || || |||||||||| Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 |||| || |||||||| || ||||| || | ||||| | || || ||||| | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 | ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| | Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATG 373 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 | || |||||||| || || || ||||||| ||| Sbjct 372 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 578 bits (640), Expect = 4e-160 Identities = 693/939 (74%), Gaps = 2/939 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||||||| | |||||||| || | || ||||| ||| | Sbjct 473 CTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTT 532 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| || | || || | |||||||| ||||||| Sbjct 533 GATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTC 591 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || |||||||| || |||| ||||| | || || |||| Sbjct 592 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 651 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || |||| ||||| || |||| |||| || || ||| | ||||| || || | Sbjct 652 ATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAA 711 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 |||||||||| ||||| |||| |||||| | || ||||||||||||| |||| ||| Sbjct 712 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 771 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | | ||||||||||||||||||||||| || || Sbjct 772 TTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 831 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| |||||||| || ||||| |||||| || || || || || || ||||| | | Sbjct 832 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCG 891 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 892 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 951 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | | || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 952 TTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1011 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 1012 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1071 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 1072 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1131 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||| | ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 1132 GTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 1191 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| ||||||||||| || || || ||||||||||| | Sbjct 1192 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 1251 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||||||| || | || || ||| |||||||||| Sbjct 1252 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 1311 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 |||| || || ||||| |||||||| || | ||||| |||| || ||||| | || | Sbjct 1312 ACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 1371 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGG 166705 | ||||| ||| | | ||||| ||| || ||||||| Sbjct 1372 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 509 bits (564), Expect = 2e-139 Identities = 730/1022 (71%), Gaps = 10/1022 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| || Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGGTGCGAACTTT 167190 || || |||||||| ||||| | || ||||| || | || || || ||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGC---CAGTTCCTATTTGGAAGGCTGTAA-TTT 1219 Query 167191 CTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 |||| | || |||||| |||||| || || | | | ||||||||| | | ||||| Sbjct 1220 CTTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATG 1279 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||||||| | ||||| ||||| | ||| ||| | || || || ||| |||| Sbjct 1280 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 1339 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || || || || || |||| || || ||||||||| | || || ||||| ||||| Sbjct 1340 TGTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGC 1399 Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428 || ||| | | | || || || ||||| || || |||||||| || |||||||| | Sbjct 1400 CCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 1458 Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488 | ||| || ||||| | ||||| || || || | ||||||||||| || | Sbjct 1459 TTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTT 1518 Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548 | || || || || || || ||||| ||||||| | |||||||| || || ||||| | Sbjct 1519 TTGGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGC 1578 Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608 |||| ||||||||||||||||| || || ||| | |||| | ||| ||||| | || | Sbjct 1579 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTA 1638 Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668 | ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || ||| Sbjct 1639 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTC 1698 Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728 || || | | ||||| | ||||| || ||||| ||||| || || ||||| || | Sbjct 1699 GTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTT 1758 Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTAT 167788 |||| || ||||| || ||||||| ||| ||||| ||| | |||||||||||||||| Sbjct 1759 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 1818 Query 167789 TCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATC 167848 | || || || | || | |||| | |||| | | ||| |||| || || | Sbjct 1819 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACC 1878 Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908 | ||||| ||||| ||||||||||| || || | || ||||| ||||| || ||||| | Sbjct 1879 TACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGA 1938 Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968 ||||||| || ||||| || || | || |||||| |||| || ||| | || || | Sbjct 1939 CTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAG 1998 Query 167969 ATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTAT 168028 |||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || | Sbjct 1999 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 2058 Query 168029 AA 168030 || Sbjct 2059 AA 2060 >seq12 Length=13301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||| Sbjct 1404 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTA 1463 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 1464 GGTTCGAATCCTACTTGGGGAG 1485 >seq10 Length=16924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct 6041 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 6099 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 ||||||||||||| ||||||| Sbjct 6100 GTTCAAATCCTACTTGGGGAG 6120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561200567528400