Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq131 502 7e-138 seq5 452 1e-122 >seq131 Length=2205 Score = 502 bits (556), Expect = 7e-138 Identities = 687/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 1303 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1245 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| ||||| ||| ||| || || || || || ||||| || || || Sbjct 1244 TTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1185 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | || || ||||| || || ||||| ||| | |||| | Sbjct 1184 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 1125 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || ||||| | ||||| || |||||||||||||| || | |||||||||| Sbjct 1124 TTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATG 1065 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| || ||||| | |||| | || | |||||| | |||| || | Sbjct 1064 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1005 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||| ||||| | || || || ||| | || ||||| ||| Sbjct 1004 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 945 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | | || || |||| || Sbjct 944 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCA 885 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 884 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 825 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || ||||||||||| ||||||||| | || || || || || Sbjct 824 ATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGT 765 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 764 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 705 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| || |||||||||||||| || Sbjct 704 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 645 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 644 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 585 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || || || ||| | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 584 CAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 525 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | ||| ||||| |||||| | ||||||||||| ||||||||||| Sbjct 524 CACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATC 465 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| ||| | |||||||| || Sbjct 464 TGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTAA 405 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||| || | || || |||||||| || || || || |||||||| || || || || Sbjct 404 CCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGC 348 >seq5 Length=20976 Score = 452 bits (500), Expect = 1e-122 Identities = 649/909 (71%), Gaps = 8/909 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| Sbjct 501 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGC--- 556 Query 41320 AACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCG 41376 ||||| || |||||||| ||||| ||| || || || || || || ||||| || || Sbjct 557 AACTTCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCG 616 Query 41377 AGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCC 41436 ||||| || |||| || || | || || ||||| || | ||||| ||| | |||| Sbjct 617 TGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCC 676 Query 41437 GAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGA 41496 | | || ||||| | ||||| |||||||| |||||||| || | ||||||| Sbjct 677 TACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGA 736 Query 41497 ATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTT 41556 |||| | |||||||| ||||| | |||| | || | |||||| | |||| || Sbjct 737 ATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 796 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 | |||||||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 797 TTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGC 856 Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || |||||||| || ||||| || ||||| ||| | | || || | || Sbjct 857 TGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGG 916 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || ||||||||||| |||||| | || || | || || ||||||| |||| | Sbjct 917 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGAT 976 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || ||||||||||||||||| || |||||||| || ||||||||| | || || || || Sbjct 977 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 1036 Query 41797 CGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCAT 41856 ||||| || || | ||| ||||||||| ||| | |||| || || | || Sbjct 1037 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 1096 Query 41857 TCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGA 41916 | || || || ||| | | || || | ||||| | || |||||||||||||| Sbjct 1097 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGA 1156 Query 41917 GACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 ||||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| Sbjct 1157 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 1216 Query 41977 CTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 || || || || ||| | || ||||| || ||||| |||||||| || ||||| || Sbjct 1217 TTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTG 1276 Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCA 42096 ||| |||| | || | || ||||| |||||| | ||||| ||||| || ||||| Sbjct 1277 GTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCA 1336 Query 42097 ATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGC 42156 |||| | | | | | | || | || || || || |||||||| || | |||||||| Sbjct 1337 ATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCGTGC 1396 Query 42157 CAACCTTGG 42165 |||||||| Sbjct 1397 TAACCTTGG 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202660902744