Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq131 482 7e-132 seq5 441 2e-119 >seq131 Length=2205 Score = 482 bits (534), Expect = 7e-132 Identities = 699/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 348 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCCAGGTTA 407 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | ||| ||||| || Sbjct 408 GCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTACAGAT 467 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || |||||||||||||| |||||||| || | |||||| | || || | | Sbjct 468 TGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAGTGAAC 527 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || ||||| || | ||||| ||| || ||| Sbjct 528 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAGTTGTTGAAA 587 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 588 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 647 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 648 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 707 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| || Sbjct 708 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 767 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||| ||||| || || || || || || |||||||| Sbjct 768 CCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACA 827 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || |||||||| |||||| |||||| ||||| Sbjct 828 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 887 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || ||| ||| || | | || |||| |||||||||| Sbjct 888 CCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 947 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| |||| ||| || || | | || || ||||||| | || || Sbjct 948 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAA 1007 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| ||| Sbjct 1008 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 1067 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || || ||||| || | ||||| || ||| | Sbjct 1068 TCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCTGCAGAAGTA 1127 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || ||||| || |||||||||||||| | || || || ||||| || ||| Sbjct 1128 GGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 1187 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || || || || |||||||||| ||||| ||| | ||| Sbjct 1188 CGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACACA-GAAGT 1246 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || |||||||| | || |||||||| || Sbjct 1247 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 1306 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 ||||| || | ||| | ||| || Sbjct 1307 GGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 441 bits (488), Expect = 2e-119 Identities = 657/932 (70%), Gaps = 0/932 (0%) Strand=Plus/Minus Query 25928 CCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCT 25987 || |||||||| ||||| | | ||||||||| ||| |||| || | | ||| Sbjct 1405 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCA 1346 Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047 ||||| || ||||| || || || ||||||||||| |||||||| |||| |||||| | | Sbjct 1345 ACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATACCTAAA 1286 Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107 | || | ||| || || || || ||||||| ||| || ||||| || | ||||| | Sbjct 1285 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAG 1226 Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATA 26167 || || ||||| ||||| || || || |||| ||||| || || || || || || ||| Sbjct 1225 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 1166 Query 26168 TTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTC 26227 ||||| || ||||| ||||| || || | || || | ||| || | | ||||| Sbjct 1165 TTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTTCTGTG 1106 Query 26228 GTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCA 26287 ||||| || | ||||| ||||| || ||||||||| ||| || | || Sbjct 1105 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 1046 Query 26288 CCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCT 26347 ||||| || ||||| || || ||| || ||||||||||| || || || || || || Sbjct 1045 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 986 Query 26348 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA 26407 |||||||| | ||| ||||| ||||||||| | || || |||||||| |||||| |||| Sbjct 985 TGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAGAAAAA 926 Query 26408 CTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTA 26467 || ||||| |||| || || | ||||| || ||| ||| || | | || || | | Sbjct 925 CTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCGGAA 866 Query 26468 TATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCT 26527 ||||||||| ||||| |||| ||| || || | | || |||||||||| | || Sbjct 865 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 806 Query 26528 GCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTG 26587 || | ||||| || | ||||||||| | | ||| |||| ||| || || || ||| Sbjct 805 ATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 746 Query 26588 TATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCG 26647 |||| ||| || || | | | ||||||||||| |||||||| || | ||||| || Sbjct 745 TATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCT 686 Query 26648 TTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAA 26707 ||| | || | | || ||||| | |||||||||||||| | || || || ||| Sbjct 685 GCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATCCAGAA 626 Query 26708 ACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAA 26767 || || ||||| || ||||| |||||||| || || || || |||||||||| ||||| Sbjct 625 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 566 Query 26768 CATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGA 26827 | ||| || | | |||| || ||||| | || ||||||||||| | || ||| Sbjct 565 ACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGA 506 Query 26828 CGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || || || | ||| | ||| || Sbjct 505 CGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147700140665120