Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq131 502 7e-138 seq5 444 2e-120 >seq131 Length=2205 Score = 502 bits (556), Expect = 7e-138 Identities = 711/994 (72%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TC 40642 || || | | ||| | || ||||||||||||| ||| || || || || || Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCC-TTGGCTATC 457 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 ||||| || |||||||| || |||||||| ||||| || ||||||||| ||||| | Sbjct 458 AACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAA 517 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | || | ||| || || | || || ||||| | || |||||||||| || ||| Sbjct 518 AGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGA 577 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 |||||||| ||||||||| || || | || ||||| ||||| || || |||||||| Sbjct 578 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGAT 637 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 |||||||| || | || ||||| || | || || | || |||||| |||| || Sbjct 638 ATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 697 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| || | | ||| Sbjct 698 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACC 757 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || ||||| | ||| || ||||| ||||| || |||||||| || || Sbjct 758 GCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGC 817 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| || Sbjct 818 CTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAA 877 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | ||| || | ||||| ||||| ||| |||| | ||||||| Sbjct 878 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGA 937 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| |||| |||||| || | | | ||| ||||||| | ||| Sbjct 938 ATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACC 997 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || || Sbjct 998 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 1057 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||| ||| || || | | | |||||||| ||||| || || || | ||||| || Sbjct 1058 GTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGC 1117 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | || || || || Sbjct 1118 TGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1177 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || ||||| || || || Sbjct 1178 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAAT-AA 1236 Query 41423 ACA-TGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 ||| | || || || | ||| | || ||||| | ||||||||||| || | ||| | Sbjct 1237 ACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 1296 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| ||||| ||||| | ||||||||| || Sbjct 1297 GACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 444 bits (492), Expect = 2e-120 Identities = 644/909 (71%), Gaps = 0/909 (0%) Strand=Plus/Minus Query 40607 ATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAA 40666 ||||||||||||| ||| || || | | || ||||| || ||||| || || || Sbjct 1382 ATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTGAA 1323 Query 40667 ACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAAC 40726 ||||| ||||| || |||||||| ||||| | | || | ||| || || | || Sbjct 1322 GCCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCCACTAC 1263 Query 40727 CGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAA 40786 || ||||| | || |||||||||| || ||| |||||||| ||||||||| || Sbjct 1262 AGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAA 1203 Query 40787 TATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACC 40846 || | || ||||| ||||| || || |||||||| |||||||| || | || ||||| Sbjct 1202 GATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACC 1143 Query 40847 AAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGT 40906 || | || || | || |||||| |||| ||||| |||| || | ||||| Sbjct 1142 GAATCTCTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGT 1083 Query 40907 AACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAG 40966 || | | || ||||||||| || | | || || || || || || ||||| | Sbjct 1082 TACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAA 1023 Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||||||||||| || |||||||| || || ||||| |||| |||||||||||| Sbjct 1022 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAA 963 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAAC 41086 || ||| ||||||| ||||||||||||||| ||| || ||||||| ||| || | Sbjct 962 AGTACCATAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 903 Query 41087 TAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCT 41146 ||||| ||||| ||| |||| | ||||| | ||||| ||| ||||| |||| Sbjct 902 CAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCGGAATATGCAACAGCAATCCAAGGTCG 843 Query 41147 CATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAA 41206 |||||| || | | | ||||||||||| | ||| ||| | ||||| || | ||| Sbjct 842 CATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAAGAAGCTACACCAAGTAA 783 Query 41207 AAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCC 41266 ||||| | ||||| |||| ||| || || |||||||||| ||| || || | | | Sbjct 782 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACGGATGC 723 Query 41267 GGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCC 41326 ||||||||||||||||| || || | ||||| || ||| | |||| | || || Sbjct 722 TGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTAGGAATAATGGCACC 663 Query 41327 AGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTAT 41386 || | ||||||||| ||||| | || || || ||||| || ||||| || ||||| || Sbjct 662 TGAGAGAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAAT 603 Query 41387 ATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGC 41446 |||||| || || || || || ||||| || || || | || || || | ||| | Sbjct 602 ATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACCGAAGTTGCGGTCAATAAGGT 543 Query 41447 TGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCA 41506 || ||||| | ||||| ||||| || | ||| || ||||| |||||||| || | ||| Sbjct 542 AGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCA 483 Query 41507 GTTACAAAA 41515 |||||| || Sbjct 482 GTTACAGAA 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143690862583374