Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq131 610 8e-170 seq5 551 6e-152 >seq131 Length=2205 Score = 610 bits (676), Expect = 8e-170 Identities = 708/953 (74%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| || || ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG--- 67469 || || || | ||| | || || ||||||||| ||| || || ||| | Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTAC---ACGGCCTTGGCTA 455 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || |||||||| || |||||||| || ||||||||||||||||| | ||| Sbjct 456 TCAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCT 515 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | |||||||||||||| | || ||||| | ||||| ||||||||||| | | Sbjct 516 AAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGC 575 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| ||||||||||| || || || || |||||||| || || Sbjct 576 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 635 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | || Sbjct 636 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 695 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||||| ||||||||||| || || ||| Sbjct 696 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAA 755 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || ||||| |||||||||||||||||||| Sbjct 756 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 815 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 816 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 875 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 ||| |||||||| | || |||| |||||| |||||| || || | || ||||| Sbjct 876 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCT 935 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| |||||||| |||||||| |||||| || ||| ||||||| |||| Sbjct 936 GAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGA 995 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| | | || | | |||||| | || | |||| |||| |||||| Sbjct 996 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 1055 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | | |||||||||||| || ||||| ||||| | |||||| Sbjct 1056 TTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATA 1115 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || ||| |||||| || ||||| || || || ||||| ||||| | || || || Sbjct 1116 GCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCA 1175 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | ||||||||| | |||||||| ||||| |||||||| || |||||||| ||||| || Sbjct 1176 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATA 1235 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || | ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 1236 AACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 1288 >seq5 Length=20976 Score = 551 bits (610), Expect = 6e-152 Identities = 663/900 (74%), Gaps = 6/900 (1%) Strand=Plus/Minus Query 67408 CCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTG 67467 |||| ||||| || | ||| | ||| || ||||||||| ||| || || ||| Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTAC---ACGGCCTT 1354 Query 67468 CG---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACA 67524 ||||| || ||||||||||| ||||| || || ||||||||||||||||| | Sbjct 1353 GACTATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGA 1294 Query 67525 CACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGAC 67584 ||| | |||||||||||||| | || ||||| | ||||| ||||||||||| | Sbjct 1293 TACCTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACG 1234 Query 67585 TTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAG 67644 | |||||||||||| ||||| ||||||||||| || || || || |||||||| | Sbjct 1233 AACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGG 1174 Query 67645 CAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTT 67704 | || || || ||||| ||||| ||||| ||||| | ||||| | || || || | Sbjct 1173 CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCAT 1114 Query 67705 GCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGA 67764 || || ||||| ||||| | | |||||| || | ||||| ||||||||||| || | Sbjct 1113 TTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATA 1054 Query 67765 GTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGT 67824 | || || ||||||||||| ||||| || | ||| || |||||||||||||||||||||| Sbjct 1053 GGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGT 994 Query 67825 GCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGT 67884 |||| || ||||| || | |||| |||| ||||||||| |||| || |||||||| | | Sbjct 993 GCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCAT 934 Query 67885 CAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTG 67944 |||| ||| |||||||||| || |||| |||||| |||||| || || | || | Sbjct 933 CAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAG 874 Query 67945 GAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACT 68004 |||| || ||||| ||| |||||||| |||||||| |||||| || ||||||||||| Sbjct 873 GAGCGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACT 814 Query 68005 GACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTC 68064 |||||| ||| | | | || | | |||||| | || | |||| |||| | Sbjct 813 CACGACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGAC 754 Query 68065 CACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGAC 68124 |||| || || ||||| ||||| | | ||||||||||||||| || || ||||| | || Sbjct 753 CACCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAAC 694 Query 68125 CGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCG 68184 |||| || ||| |||||| || ||||| || | || ||||| ||||| | || | Sbjct 693 CGATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAG 634 Query 68185 AACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAA 68244 | || | ||||||||| | |||||||| ||||| |||||||| || |||||||| |||| Sbjct 633 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAA 574 Query 68245 TGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | || || | | ||| | | ||| ||| |||||||| ||||||||||| |||| Sbjct 573 TAATAAATACCGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAA 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566899285874760