Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq131 715 0.0 seq5 655 0.0 seq21 538 4e-148 seq12 96.9 4e-15 seq10 89.7 6e-13 >seq131 Length=2205 Score = 715 bits (792), Expect = 0.0 Identities = 758/994 (76%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| || || ||||||||||| || || ||||| |||||||||||||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 |||| ||| ||||||| || || ||||| ||| | || || |||||| Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 458 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | ||| ||||| || ||||||||||| |||||||||||||| || || | ||| | Sbjct 459 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 518 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 ||||||||||||||||| || |||||||| ||||| ||||||||||| | |||||| ||| Sbjct 519 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 578 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 |||||||| ||||| |||||||||| || || || || ||||| || || || || Sbjct 579 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 638 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 || ||||| ||||| ||||||||||| ||||||| | || || ||| |||| ||| Sbjct 639 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 698 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 ||||| | | || |||||| |||| |||||||||||| |||||||| || || || Sbjct 699 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 758 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 || ||||| ||||| ||||| | ||| || || || ||||| |||||||||||||| || Sbjct 759 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 818 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 ||||| || | |||| ||||||||||||||||||| || |||||||| | ||||| || Sbjct 819 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 878 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||| | || |||| || ||| || |||| || ||||||||||| || || Sbjct 879 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 938 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 ||||||||| |||||||| |||||||| ||||| | ||| ||||| ||||| ||| Sbjct 939 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 998 Query 68494 ATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTG 68553 ||||| | | ||||| | |||||| | | | |||| |||||||||||||| Sbjct 999 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 1058 Query 68554 TACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCA 68613 || ||||| ||||||| || ||||||||||||||| ||||||||||| | ||| || || Sbjct 1059 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 1118 Query 68614 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCA 68673 ||| |||||| || ||||| || || || ||||| || || || || || |||| | Sbjct 1119 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 1178 Query 68674 ACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA- 68732 |||||||||||||||||||| || || || || ||||| || |||||||| | || || Sbjct 1179 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 1238 Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 ||||| ||||| | ||| || ||||||||||||| || || ||||| || | ||||| Sbjct 1239 ACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 1296 Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | ||||| || || ||| | ||| | ||||| Sbjct 1297 GACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 655 bits (726), Expect = 0.0 Identities = 665/861 (77%), Gaps = 4/861 (0%) Strand=Plus/Minus Query 67947 ACTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAAC 68006 |||||||| | ||| |||||||| ||||| ||||| |||||||||||||| ||||| | Sbjct 1352 ACTATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGAT 1293 Query 68007 ACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGA 68066 ||| | ||||||||||||||||| || |||||||| ||||| ||||||||||| | ||| Sbjct 1292 ACCTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGA 1233 Query 68067 ACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGC 68126 ||| ||||||||||| ||||| |||||||||| || || || || ||||| || || Sbjct 1232 ACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGC 1173 Query 68127 AACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGT 68186 || || || ||||| ||||| ||||||||||| | ||||| | || || ||| | Sbjct 1172 TACGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATT 1113 Query 68187 TTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAG 68246 ||| |||||||| | | || |||||| |||| |||||||||||| |||||||| || Sbjct 1112 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAG 1053 Query 68247 AGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTG 68306 || || || ||||| ||||| ||||| | ||| || || |||||||| ||||||||||| Sbjct 1052 GGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTG 993 Query 68307 CTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTC 68366 ||| || ||||| || | |||| |||||||||||||| |||| || |||||||| | || Sbjct 992 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATC 933 Query 68367 AGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGG 68426 ||| || |||||||||| || |||| || ||| || |||| || ||||||||||| Sbjct 932 AGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGG 873 Query 68427 TGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTC 68486 || || ||||||||| |||||||| |||||||| ||||| | ||||||||| || Sbjct 872 AGCGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTC 813 Query 68487 ACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACC 68546 ||| |||||||| | | | ||||| | |||||| | | | |||| ||||||| Sbjct 812 ACGACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 753 Query 68547 ACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACC 68606 ||| ||||| ||||| ||||||| || |||||||||||| || || |||||||| | ||| Sbjct 752 ACCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACC 693 Query 68607 AATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGA 68666 || || ||| |||||| || ||||| || | || ||||| || || || || || Sbjct 692 GATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGA 633 Query 68667 ACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGAC 68726 |||| ||||||||||||||||||||| || || || || |||||||| |||||||| | Sbjct 632 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAAT 573 Query 68727 GATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCA 68784 || || || || ||||| | ||| || ||||||||||||| || |||||||| ||| Sbjct 572 AATAAATACCGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCGAACCATCCA 515 Query 68785 ACGTAAAGGCGGTTCTCTGTG 68805 | |||||| ||||| || ||| Sbjct 514 ATGTAAAGACGGTTTTCGGTG 494 >seq21 Length=7990 Score = 538 bits (596), Expect = 4e-148 Identities = 725/1007 (72%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 2061 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 2002 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || |||||||| || || ||||||| Sbjct 2001 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 1942 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | || || || || || ||||| || |||| Sbjct 1941 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCAC 1882 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || | ||| | | || | | ||| |||| | ||| | || || | Sbjct 1881 GTAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 1822 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 1821 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 1762 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| ||||| ||||| || || ||||||||| ||||||| | || || | Sbjct 1761 ACCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAG 1702 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | || || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 1701 CACGAAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 1642 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | ||||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 1641 GAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 1582 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||| ||||| |||||||| | ||||| | ||||| ||| || |||| || | Sbjct 1581 TCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACAC 1522 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || || || || || || || || || ||| || Sbjct 1521 CAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAA 1462 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || || |||||||| || || ||||| || || || | | || ||| Sbjct 1461 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 1403 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || || ||||| || || | ||||||||| ||||| | ||||| || || || || Sbjct 1402 CGGGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCA 1343 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 1342 ACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 1283 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || ||||| Sbjct 1282 CCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTT 1223 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | |||||| || || | ||| | || | || || || ||||| || ||| Sbjct 1222 AAGAAATTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACA 1163 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || || ||||| || | ||| || || | || | ||| ||| ||||| || | ||| Sbjct 1162 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGA 1103 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || |||||||| ||||| || || || || | | ||||||||| Sbjct 1102 CCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 1056 >seq12 Length=13301 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| || Sbjct 1493 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGC 1436 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 1435 TCTACCACTGAGCTACTGAGGA 1414 >seq10 Length=16924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 6120 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 6061 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 6060 AGCTACTGAGGA 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572006054252520