Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq131 681 0.0 seq5 625 3e-174 seq21 621 4e-173 >seq131 Length=2205 Score = 681 bits (754), Expect = 0.0 Identities = 749/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | || ||| | |||||||| || |||| ||||| ||||| | Sbjct 1331 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 1272 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 |||||| || || | ||| | ||||| | || || | || ||||| || ||||| Sbjct 1271 GATGATCCCTACCTTATTGACCGCAACTTCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 || ||||| ||||| || ||||| ||||| ||||||||| ||||||| ||||| || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 ||||||||||| || | ||||||||| | ||||| |||||||||| |||| |||| Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | | ||||||||||||||||||||| || || ||| Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 |||||||||| || ||||| ||| |||||||| || ||||| ||||| ||||| | | Sbjct 971 TCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 913 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| | |||| || | |||||||| ||| ||||||| ||||| || || | Sbjct 912 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 853 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 ||||||| || ||||||| |||| |||| ||||| || ||||||||||| || ||||| | Sbjct 852 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 793 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | || || ||| | || || |||||||| ||||| || || || ||| || ||||| | Sbjct 792 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 733 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 |||| |||| |||||| || | | || ||||| ||||| || || || | | Sbjct 732 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 673 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 |||||| ||||||||||| ||||| || || || ||||| ||||| || ||||| |||| Sbjct 672 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 613 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 | || | ||||||||||| ||| |||||||| || |||||| | ||||||||||| | Sbjct 612 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 553 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || |||||||| || ||||||||||||||||| | ||| |||| || |||||||||| Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 |||| || |||||||| || ||||| || | | ||| | || ||| || | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | ||||| || || | |||||||| |||||||||||||||||||| || ||||||| Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATG 373 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 |||| ||||||||||| || || ||||||| ||| Sbjct 372 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 625 bits (692), Expect = 3e-174 Identities = 706/941 (75%), Gaps = 6/941 (1%) Strand=Plus/Plus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| || | |||||||| || | || ||||||||||| | Sbjct 473 CTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTT 532 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCT--TCATCGTGGCATTCATCGCTGCT 150955 |||||| || || | ||| | ||||| || | | | || | || ||||| |||||| Sbjct 533 GATGATCCCTACCTTATTGACCGCAAC--TTCGGTATTTATTATTGCCTTCATTGCTGCT 590 Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015 || || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||| Sbjct 591 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAC 650 Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075 || || |||| ||||| || ||||| ||||| ||||||||| ||||||| || || Sbjct 651 AATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCA 710 Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135 |||||||||||||| || | ||||||||| | |||||||||||||||| |||| || Sbjct 711 ATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATT 770 Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 || | |||||| | ||||| | | ||||||||||||||||||||||||| || | Sbjct 771 GTTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTC 830 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || |||||||||| || ||||| ||| |||||||| || ||||| ||||| ||||| | Sbjct 831 CGTCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTAC 889 Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314 || || ||| | |||| || |||||||||| ||| ||||||| ||||| || || Sbjct 890 CGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 949 Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374 |||| ||| || ||||||| |||| |||| ||||| || ||||||||||| || ||||| Sbjct 950 AATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 1009 Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434 ||| || || ||| | || || |||||||| ||||| || || || ||| || ||||| Sbjct 1010 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 1069 Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494 ||||| |||| |||||| || | | || ||||| ||||| || || || | Sbjct 1070 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 1129 Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554 ||||| | ||||||||||| ||||| || || || ||||| ||||| || ||||| || Sbjct 1130 AGGTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 1189 Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614 ||| || | ||||||||||| ||| |||||||| || |||||| | ||||||||||| Sbjct 1190 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCT 1249 Query 151615 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATT 151674 || || |||||||| || ||||||||||||||||| | ||| ||||||| |||||||| Sbjct 1250 AGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATT 1309 Query 151675 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 151734 |||||| || || ||||| |||||||| || | | ||| |||| ||| || | || Sbjct 1310 CAACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAA 1369 Query 151735 CACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGG 151775 || ||||| || | | |||||||| || ||||||| Sbjct 1370 TACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 621 bits (688), Expect = 4e-173 Identities = 750/1015 (74%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| |||||||| || Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || |||||||| || |||||||| ||||||||| |||| ||| || |||||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTT 1222 Query 152539 A-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 152597 | | || |||||||||||||| || || | | | |||||| | || | || ||||| Sbjct 1223 AACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGG 1282 Query 152598 TCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGT 152657 |||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 1283 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 1342 Query 152658 GGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 152717 || || || || ||||| | ||||| ||||||||| | || || ||||| || || || Sbjct 1343 TGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCG 1402 Query 152718 -TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 152776 ||| || | | || || || ||||| || || |||||||| || || |||||||||| Sbjct 1403 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTG 1461 Query 152777 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCG 152836 || || || || || || || || || || || ||||||| || || || ||| | Sbjct 1462 TTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTG 1521 Query 152837 GGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGA 152896 | || ||||| || || ||||| | ||||| |||||||||| || || ||||| ||| Sbjct 1522 GTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGA 1581 Query 152897 ATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTC 152956 | || |||||||||||||| ||||| ||| | ||||| | || ||||| | || |||| Sbjct 1582 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTC 1641 Query 152957 ATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAG 153016 |||||| ||| ||||| |||||||| | | |||||||||| ||||| || || | Sbjct 1642 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTG 1701 Query 153017 CTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 153076 |||| || ||||||| ||||| |||||||| ||||| ||||| ||||| || |||| Sbjct 1702 CTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGT 1761 Query 153077 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 153136 |||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||| Sbjct 1762 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 1821 Query 153137 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 153196 |||| || | ||| | |||| | || ||||| | | ||| | || || || || | Sbjct 1822 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTAC 1881 Query 153197 GTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 153256 |||| ||||| || || ||||| ||||| | || | |||||||||||||||||||| | Sbjct 1882 GTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTT 1941 Query 153257 TCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACC 153316 |||| || || ||||| || || ||||||||| |||| |||||| |||| || || | Sbjct 1942 TCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 2001 Query 153317 AACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 | |||||||| ||| | | |||||||| ||||| | ||||| || |||||||| Sbjct 2002 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549575950036920