Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq131 587 9e-163 seq5 554 5e-153 seq21 531 6e-146 >seq131 Length=2205 Score = 587 bits (650), Expect = 9e-163 Identities = 731/995 (73%), Gaps = 5/995 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || | |||||| | || ||||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||| ||||| || | || |||| || || ||| | ||||| ||||| || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | || ||||| ||||||||||| ||| | ||| Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || |||| Sbjct 971 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 912 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | |||| || | |||||||| || || |||| ||||||||| || | Sbjct 911 TGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 853 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| |||| |||||||||| || || ||||| ||||||||||| | Sbjct 852 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 793 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 792 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 733 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || |||||| | || | || || ||||||| ||| || || | | Sbjct 732 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 673 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 672 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 613 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 612 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 553 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || ||||||||||| || | ||| | || |||||||| | Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| ||||| ||||| || ||||| || | | || | ||||| ||||| | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | |||||||||| || || |||||||| ||||| ||| | ||| Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAAT- 374 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGCAGCTGA 178550 || ||||||||||| || ||||| || || | ||| Sbjct 373 GCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 554 bits (614), Expect = 5e-153 Identities = 681/925 (74%), Gaps = 4/925 (0%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| |||| ||| | ||||| || || | || |||||||| || || Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| || | || || | |||||| | |||||||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCC 592 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 593 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 652 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || |||| ||||| || | || |||| || || ||| | ||||| || || || Sbjct 653 TATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 712 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 713 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 772 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | | || ||||| ||||||||||||||| | ||| Sbjct 773 TCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 832 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || |||| Sbjct 833 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGC 892 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | |||| || |||||||||| || || |||| ||||||||| || | Sbjct 893 TGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 951 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | | ||||||||| |||| |||| |||||||||| || || ||||| ||||||||||||| Sbjct 952 TTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1011 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 1012 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1071 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || |||||| | || | || || ||||||| ||| || || | | Sbjct 1072 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1131 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||| | ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 1132 GTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 1191 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 1192 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 1251 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || ||||||||||| || | ||| | ||| |||||||| | Sbjct 1252 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 1311 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| ||||| ||||| |||||||| || | | || | ||||| ||||| | || | Sbjct 1312 ACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 1371 Query 178456 CATGGGCAGACGTGCTCAACCGTGC 178480 | ||||| || | |||||||||| Sbjct 1372 CTTGGGCTGATATCATCAACCGTGC 1396 >seq21 Length=7990 Score = 531 bits (588), Expect = 6e-146 Identities = 724/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| |||||||| || || | || Sbjct 1054 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 1113 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 1114 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 1173 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||||||| | ||||| ||| ||||||| | || || Sbjct 1174 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCA 1232 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 1233 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCA 1292 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || || |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 1293 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCAT 1352 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || || | ||||| || |||||| | ||||| ||||| || || || ||| || Sbjct 1353 GGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAA 1412 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || |||| || ||||| || || ||| |||||| Sbjct 1413 T-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 1471 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||||| || || || ||||||||||||| || |||||||| || || Sbjct 1472 CCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1531 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 || ||||||||| | || || || ||||| || || || ||||| || ||||| ||||| Sbjct 1532 TATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCA 1591 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||||||||| ||| | |||| | |||| |||| | ||||||||||| | || Sbjct 1592 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTAC 1651 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 |||||| ||||| || | ||||||||| || ||||| |||||| || || || | Sbjct 1652 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCC 1711 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| ||| || |||||||| ||||| || |||||||| |||||||| || ||||| Sbjct 1712 AACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTT 1771 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 1772 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 1831 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 ||| | ||| | | || |||| | | || | || || || || ||||| || || Sbjct 1832 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGA 1891 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 || || ||| || || | ||||| ||||||||||| || ||||| ||||| || || Sbjct 1892 CTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 1951 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 || ||||| | || ||||| | || |||||| |||| || ||||| || ||||| Sbjct 1952 AAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 2011 Query 179907 AAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| | || ||||| || || || ||||| |||| ||||| || Sbjct 2012 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605616013550760