Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq131 601 1e-167 seq5 522 8e-144 >seq131 Length=2205 Score = 601 bits (666), Expect = 1e-167 Identities = 729/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| ||| | ||||||||||| | || |||||||| ||||||| Sbjct 1325 TAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGAT 1266 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| |||||||| ||||| |||| Sbjct 1265 CCC-TACCTTATTGACCGCAACTTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAG 1207 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || ||||| |||||||| || | Sbjct 1206 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 1147 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || ||||| | ||||| || |||||||| Sbjct 1146 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTATCCAATTTG 1089 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 1088 GGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 1029 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||| ||||| | || || Sbjct 1028 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCT 969 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || | || || Sbjct 968 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT 909 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || || | Sbjct 908 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 850 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || ||||| || | Sbjct 849 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCAT 790 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | || || |||||||||||||| || || ||||||||||| ||||| |||| Sbjct 789 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT 730 Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 729 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 671 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 670 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 611 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| ||||||||| ||||| ||||||||||||| ||| Sbjct 610 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCT 551 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || || || || |||||| |||| || || | ||| ||||| || || Sbjct 550 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAAC 491 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| |||||||| || | | || | | | || ||||| ||| ||||| Sbjct 490 CTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACT 431 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| |||| |||||||| || || | || || ||||||||||| |||||| Sbjct 430 TGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGCT 371 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 ||||||||||| || || || || Sbjct 370 CATAACTTCCCTCTAGATCTAGC 348 >seq5 Length=20976 Score = 522 bits (578), Expect = 8e-144 Identities = 681/932 (73%), Gaps = 10/932 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| ||||| || ||||||| Sbjct 479 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGAT 538 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | || | || |||||||| |||||||| ||||| |||| Sbjct 539 CCC-TACCTTATTGACCGCAACTTCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 597 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || ||||| |||||||| || Sbjct 598 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTC 657 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || ||||| | ||||| |||||||| || Sbjct 658 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTACCCAATCTG 715 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | |||||||| || || | |||| | || | Sbjct 716 GGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCT 775 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | |||||||||| || |||||||||||||| | || || Sbjct 776 ACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 835 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || | || || Sbjct 836 GGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGT 895 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| | ||||| || || || || |||| ||||||| | || || | Sbjct 896 -TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 954 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 955 ATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 1014 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | || || |||||||||||||| || || ||||||||||| ||||| |||| Sbjct 1015 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 1074 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 1075 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 1133 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 || | || || ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 1134 TAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 1193 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| ||||||||| ||||| ||||||||||||| ||| Sbjct 1194 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCT 1253 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || || || || |||||| |||| || || | || ||||| || || Sbjct 1254 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAAC 1313 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || || ||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 1314 CTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 1373 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436 |||||||| || |||| |||||||| || || Sbjct 1374 TGGGCTGATATCATCAACCGTGCTAACCTTGG 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148816851000738