Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq131 610 7e-170 seq5 562 3e-155 seq21 535 5e-147 >seq131 Length=2205 Score = 610 bits (676), Expect = 7e-170 Identities = 735/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | ||||| ||||| || || | |||||| | || ||||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | || ||||| ||||||||||| ||| | ||| Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 971 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 912 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | || || | |||||||| ||| || |||| ||||||||| || || Sbjct 911 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 852 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 ||||||||||| |||| |||| |||||||||| || || ||||| |||||||||||||| Sbjct 851 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 792 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || |||||| | ||||| ||||| |||||||| || || | ||| ||||||||| || Sbjct 791 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 732 Query 160559 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | || ||||| | | | || | ||||| || |||| || || || | | Sbjct 731 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 673 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| | ||||||||||||||||| || || || ||||| || || |||||||| || | Sbjct 672 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 613 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 612 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 553 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||||||||| || ||||||||||||||| | ||| | || || |||||||||| Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| || |||||||| || ||||| || | | ||| | ||||| |||||| | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| || | | || |||||| || |||||||||||||||||||| ||||| | Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATG 373 Query 160918 CACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 | || |||||||| || || || ||||||| ||| Sbjct 372 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 562 bits (622), Expect = 3e-155 Identities = 691/939 (74%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||| | ||| |||| ||| | ||||| || || | || |||||||| || || Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | ||||| || || || || | |||||| | |||||||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCC 592 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 593 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 652 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || |||| ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 653 TATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 712 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 713 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 772 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | | || ||||| ||||||||||||||| | ||| Sbjct 773 TCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 832 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 833 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGC 892 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | || || |||||||||| ||| || |||| ||||||||| || || Sbjct 893 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 952 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 | ||||||||| |||| |||| |||||||||| || || ||||| ||||||||||| || Sbjct 953 TTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1012 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || |||||| | ||||| ||||| |||||||| || || | ||| ||||||||| || Sbjct 1013 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1072 Query 160559 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | || |||| || | | || | ||||| || |||| || || || | | Sbjct 1073 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1131 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| | ||||||||||||||||| || || || ||||| || || |||||||| || | Sbjct 1132 GTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 1191 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 1192 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 1251 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||||||||| || ||||||||||||||| | ||| | ||||| |||||||||| Sbjct 1252 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 1311 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| || || ||||| |||||||| || | | ||| ||||||| |||||| | || | Sbjct 1312 ACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 1371 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGG 160896 | ||||| || | | || |||||| |||||||||| Sbjct 1372 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 535 bits (592), Expect = 5e-147 Identities = 735/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||||||| | | ||| || || ||||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCT 1221 Query 161867 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 161924 | ||||| ||||| ||||| ||| | | | | |||||| || || || || ||| Sbjct 1222 TAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTACTATGG 1280 Query 161925 GGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTT 161984 |||||||| || ||||| ||||| || ||| ||| | || || || |||| |||| Sbjct 1281 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTT 1340 Query 161985 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 162044 || || || ||||| || || | ||||| || |||||| | ||||| ||||| || || Sbjct 1341 GTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCC 1400 Query 162045 CGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 || | || | || || || ||||| || || |||||||| || |||||||||||| Sbjct 1401 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 1460 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || || ||||| || || ||| | || ||||| ||||||| || || || ||| Sbjct 1461 GTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTT 1520 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTG 162224 || || ||||| || ||||||||| | | ||| |||||||||| ||||| ||||| ||| Sbjct 1521 GGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTG 1580 Query 162225 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATT 162284 ||||| || ||||||||||||||||| ||| || | || | || | |||| |||||| Sbjct 1581 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 1640 Query 162285 CACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 162344 || || | || || |||||||| |||| || ||||| || ||||| || ||| Sbjct 1641 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGT 1700 Query 162345 GCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 || ||| | | || || | |||||| || ||||| ||||||||||| |||||||| ||| Sbjct 1701 GCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGG 1760 Query 162405 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 162464 || || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 1761 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 1820 Query 162465 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 162524 || || || | ||| |||||| || |||| | | ||| | || || ||||| Sbjct 1821 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTA 1880 Query 162525 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACG 162584 ||||| ||||| ||||| |||||| || | ||||| ||||||||||| ||||| || Sbjct 1881 CGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACT 1940 Query 162585 TTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 162644 |||||||| || || ||||| | || ||||| | || || ||| | || || || Sbjct 1941 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 2000 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 2001 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 2060 Query 162705 T 162705 | Sbjct 2061 T 2061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559456714918200