Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq131 578 6e-160 seq5 551 8e-152 seq21 452 6e-122 >seq131 Length=2205 Score = 578 bits (640), Expect = 6e-160 Identities = 715/973 (73%), Gaps = 4/973 (0%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| ||||| |||||| | ||||| ||||| || || || Sbjct 1309 ACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1250 Query 174549 GCAACTG-TATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||||| ||||| || ||| | | ||||| ||||| || || || || || Sbjct 1249 GCAACTTCTGTGTTT-ATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTAT 1191 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 |||||||| || |||| || || | || |||||||| || ||||| ||||| || | Sbjct 1190 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 1131 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || |||||| | ||||| || ||||| ||||||||||| | | || Sbjct 1130 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGA 1071 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | ||||| |||||||||| ||||| |||| | |||||| | ||||| | Sbjct 1070 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 1011 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 || ||||| ||||||||||| || || ||| | |||||| |||||||||| Sbjct 1010 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 951 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || |||||||| ||| | || || ||| | |||| || | Sbjct 950 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 891 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 |||||||| || || || | ||||| | || || ||||| || ||||||| ||| Sbjct 890 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 831 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| || || || |||||| | ||||| || || |||||||| || || || Sbjct 830 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGC 771 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||| ||||| | ||| || ||||||||||| |||| || || | | Sbjct 770 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTT 712 Query 175088 TG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAG 175146 || || | || || || |||| ||| || || | ||||||| ||||| ||||| | Sbjct 711 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 652 Query 175147 AAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 175206 |||| || ||||| ||||| || || ||||| || || || || |||||||||||||| | Sbjct 651 AAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 592 Query 175207 CTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTA 175266 || ||||||||||| || || | ||||||||| |||| || ||||| || ||||||| Sbjct 591 CTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTA 532 Query 175267 TCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCA 175326 |||||||||| || | ||| | || |||||||||||||| ||||||||||| || | Sbjct 531 TCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTA 472 Query 175327 ACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACA 175386 |||| ||||| | || | ||||| | ||| | || || ||||| ||| || | ||| Sbjct 471 ACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACC 412 Query 175387 GAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATT 175446 | ||| || || |||||||| |||||||| | ||||| || |||||||| |||||| Sbjct 411 GTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATC 352 Query 175447 TGGCAGCAGCTGA 175459 | || || | ||| Sbjct 351 TAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 551 bits (610), Expect = 8e-152 Identities = 676/918 (74%), Gaps = 4/918 (0%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| | || |||||||||||| | ||||| ||||| || || || Sbjct 495 ACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 554 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | || || ||||| || ||| | | |||||| ||||| || || || || || Sbjct 555 GCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 613 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 |||||||| || |||| || || | || |||||||| || |||| ||||| || | Sbjct 614 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTAT 673 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || |||||| | ||||| |||||||||||||||||||| | | || Sbjct 674 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 733 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | |||||||||||||||| ||||| |||| | |||||| | ||||| | Sbjct 734 TGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 793 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 | || ||||| |||||||||||||| || ||| | |||||| |||||||||| Sbjct 794 AGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 853 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || |||||||| ||| | || || ||| | |||| || | Sbjct 854 TGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 913 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 ||||||||| || || || | ||||| | || || | ||| || ||||||| ||| Sbjct 914 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCAT 973 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| || || || |||||| | |||||||| || |||||||| || || || Sbjct 974 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 1033 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||| || || | ||| || ||||||||||| |||| || || | | Sbjct 1034 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTT 1092 Query 175088 TG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAG 175146 || || | || || || |||| ||| || || | ||||| | ||||| ||||| | Sbjct 1093 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGG 1152 Query 175147 AAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 175206 |||| || ||||| ||||| || || ||||| || || || || |||||||||||||| | Sbjct 1153 AAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 1212 Query 175207 CTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTA 175266 || ||||||||||| || || | ||||||||| |||| || ||||| || ||||||| Sbjct 1213 CTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTA 1272 Query 175267 TCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCA 175326 |||||||||| || | ||| | ||| |||||||||||||| ||||| ||||| |||| Sbjct 1273 TCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCA 1332 Query 175327 ACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACA 175386 |||| ||||| | || | ||||| | ||| | || || ||||| ||| | | ||| Sbjct 1333 ACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACC 1392 Query 175387 GAGCTGGTCTTGGGATGG 175404 | ||| ||||| |||| Sbjct 1393 GTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 452 bits (500), Expect = 6e-122 Identities = 705/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || ||||| || | Sbjct 1046 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 1105 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 1106 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 1165 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| |||||||| | || ||||||| | || || ||| || | || Sbjct 1166 AACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAAC 1225 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 ||| || || || ||||||||| || | | | |||||| | | |||| |||||||| Sbjct 1226 AGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCC 1285 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 1286 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGC 1345 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||| || || || || | || || || |||||| | ||||| ||||| || || || Sbjct 1346 TCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATC 1405 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || |||||| ||| || || ||||| ||||| Sbjct 1406 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTC 1465 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || |||||||| || ||| ||||||||||| || |||||||| Sbjct 1466 TGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGT 1525 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||||||||| | | ||| |||| || || || || ||||| |||||||| Sbjct 1526 AGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCC 1585 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| ||| || | || | || | |||| || || ||||| Sbjct 1586 ATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGG 1645 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | |||||| |||||||| ||| ||||||||| || || || || ||| || Sbjct 1646 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTT 1705 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | |||||| |||||||| ||||| |||||||||||||| ||||| || Sbjct 1706 TAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCA 1765 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 1766 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 1825 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || | || || || || ||||| Sbjct 1826 AGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGC 1885 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 || || || || || || ||| | ||||| ||||||||||| ||||| |||||||| Sbjct 1886 CTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 1945 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 ||| || || || || | |||||||| | | || |||||||| || ||||| || Sbjct 1946 CACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCC 2005 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 2006 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 2053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729867911824680