Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq131 594 6e-165 seq5 563 1e-155 seq21 471 5e-128 >seq131 Length=2205 Score = 594 bits (658), Expect = 6e-165 Identities = 729/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || | |||||| | || ||||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | |||||||| ||||||||||| ||| | ||| Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 971 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 912 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| || | |||||||| |||||||| | ||||| || || || Sbjct 911 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 852 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 |||||||| ||||||| |||| |||| ||||| || || |||||||| || ||||| || Sbjct 851 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 792 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||| || || || ||||||||||| ||||| || |||||||| ||||| || Sbjct 791 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 732 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | | | ||||| || |||| ||||| || | || Sbjct 731 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 672 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | ||||| ||||| ||||| || || || ||||| || || ||||| || || || Sbjct 671 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 612 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || |||||||||||||||||| ||||||||||| ||||| | ||||||||||| || Sbjct 611 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGC 552 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || ||||||||||| || | || | || || |||||||| || Sbjct 551 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAA 492 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 ||| ||||| ||||| || ||||| || | | || | ||||| ||||| | || || Sbjct 491 CCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATAC 432 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | |||||||||| || || |||||||| ||||| || || || || Sbjct 431 TTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGC 372 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 178840 || |||||||| || ||||| || || | ||| Sbjct 371 TCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 563 bits (624), Expect = 1e-155 Identities = 681/924 (74%), Gaps = 2/924 (0%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| |||| ||| | ||||| || || | || |||||||| || || Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| || || || || | |||||| | |||||||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCC 592 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 593 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 652 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || |||| ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 653 TATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 712 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 713 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 772 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | | |||||||| ||||||||||||||| | ||| Sbjct 773 TCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 832 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 833 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGC 892 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| || |||||||||| |||||||| | ||||| || || || Sbjct 893 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 952 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 | |||||| ||||||| |||| |||| ||||| || || |||||||| || |||||||| Sbjct 953 TTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1012 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||| || || || ||||||||||| || || || |||||||| ||||| || Sbjct 1013 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1072 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | | | ||||| || |||| ||||| || | || Sbjct 1073 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 1132 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | ||||| ||||| ||||| || || || ||||| || || ||||| || || || Sbjct 1133 TTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 1192 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || |||||||||||||||||| ||||||||||| ||||| | ||||||||||| || Sbjct 1193 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 1252 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || ||||||||||| || | || | ||||| |||||||| || Sbjct 1253 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAA 1312 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 ||| ||||| ||||| |||||||| || | | || | ||||| ||||| | || || Sbjct 1313 CCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 1372 Query 178748 ATGGGCAGACGTGCTCAACCGTGC 178771 ||||| || | |||||||||| Sbjct 1373 TTGGGCTGATATCATCAACCGTGC 1396 >seq21 Length=7990 Score = 471 bits (522), Expect = 5e-128 Identities = 709/1002 (71%), Gaps = 4/1002 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 1054 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 1113 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 1114 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 1173 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | || ||||||||| | || || ||| ||||||| | || || Sbjct 1174 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCA 1232 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 1233 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCA 1292 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || || |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 1293 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCAT 1352 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || || | || || ||||||||| | | |||||||| ||||| || ||| | Sbjct 1353 GGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAA 1412 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||||| ||||| || || || ||||| || |||||||| || || ||| || Sbjct 1413 TTGC-GACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 1471 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| | || ||||| |||||| || || || |||||||| || || Sbjct 1472 CCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1531 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || || || ||| | || || |||| || || || || |||||||| ||||| || || Sbjct 1532 TATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCA 1591 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| ||| || | || | || |||| | ||||| ||||| | ||| Sbjct 1592 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTAC 1651 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 |||||| ||||| || | ||||||||| || |||||||| ||| || ||| | | Sbjct 1652 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCC 1711 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| || ||||| ||||||||||| |||||||| ||||| || ||||| Sbjct 1712 AACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTT 1771 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 1772 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 1831 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| || |||| | | ||| | || || ||||| ||||| ||||| Sbjct 1832 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGA 1891 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||||| |||||| || | ||||| |||||||| || |||||||| ||||||||||| Sbjct 1892 CTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 1951 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || ||||| | || ||||| | || || ||| |||| | ||||| || ||||| Sbjct 1952 AAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 2011 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 2012 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 2053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605958384613680