Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq131 553 2e-152 seq5 508 7e-139 >seq131 Length=2205 Score = 553 bits (612), Expect = 2e-152 Identities = 697/955 (73%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||||||||| | ||||| || | | || || | | ||| Sbjct 1296 TTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTG 1238 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1237 TTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 1178 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || |||||||| || | | || | || Sbjct 1177 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 1118 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| || ||||| |||||||||||| | ||||| |||||| | ||| Sbjct 1117 GCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATAC 1058 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 1057 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 998 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||| ||||||| | | || || ||||| |||||||| ||||||||| Sbjct 997 GGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 938 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||| ||| | ||||||||| | Sbjct 937 TCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 878 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 877 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 818 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 817 GCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 758 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 757 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 698 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 697 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 638 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 637 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 578 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | ||||||||||| || || | || || || | |||||||| ||||| Sbjct 577 TCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCT 518 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | | || |||||||||||||| || |||||||| || ||||| ||||| | Sbjct 517 TTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTT 458 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | | || || ||| ||| |||| ||||| | |||||||| ||||| ||| Sbjct 457 GATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTGGGT 398 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||||||||||| |||||||| || || || ||||||| Sbjct 397 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTG 343 >seq5 Length=20976 Score = 508 bits (562), Expect = 7e-139 Identities = 619/844 (73%), Gaps = 0/844 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 567 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 626 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || ||||||| || | | || | || Sbjct 627 TCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCCTACTTCTGCA 686 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| ||||||||||||||||||||| | ||||| |||||| | ||| Sbjct 687 GCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATAC 746 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || |||| |||| | |||||| | | ||| | | |||||||| Sbjct 747 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTCTTACATG 806 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 807 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 866 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||| ||| ||||||||||| | Sbjct 867 TCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 926 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || |||| ||||| |||||||| ||| |||||||||| Sbjct 927 TTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAG 986 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 987 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 1046 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 1047 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 1106 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||| | |||||| ||||| ||||| || || || Sbjct 1107 ACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGAAACTTATAAT 1166 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 1167 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 1226 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | ||||||||||| || || | || || || | |||||||| ||||| Sbjct 1227 TCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCT 1286 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | |||| |||||||||||||| || || ||||| |||||||| ||||| | Sbjct 1287 TTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCAATCTGTAGTT 1346 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | || || ||| ||| |||| |||||| | |||||||| ||||||||| Sbjct 1347 GATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGT 1406 Query 177046 ATGG 177049 |||| Sbjct 1407 ATGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603443397179520