Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2 661 0.0 seq1 616 2e-171 >seq2 Length=21306 Score = 661 bits (732), Expect = 0.0 Identities = 728/960 (76%), Gaps = 12/960 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | || || ||||| ||||| || || | || |||||||| || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| |||| ||||| || || | Sbjct 20037 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || ||||||||| |||| |||||| | |||||||| | Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCC 135609 | || ||||| ||||| |||| ||| || ||| || ||||| | ||||| ||||| Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTATCC 20212 Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669 || |||||||| || || ||||||| ||| |||| ||||||||||||||| ||||| | Sbjct 20213 AATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 20272 Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729 || | |||||| | | ||||| | |||||||||||| |||||||| || || Sbjct 20273 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 20332 Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||| Sbjct 20333 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 20392 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849 ||||||||| || ||||||| |||| ||||| ||| |||||||||||| || || Sbjct 20393 CGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 20452 Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909 |||||||| ||||| |||| |||| |||| |||||||| || |||||||| || ||||| Sbjct 20453 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 20512 Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969 ||| || |||||||| || || ||||| || ||||| ||||| || ||| ||||||||| Sbjct 20513 TCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 20572 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| || | || || |||||| | | | || || || || ||||| || | Sbjct 20573 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 20632 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||||||||| ||||| ||||| || || || || ||||||||||| || Sbjct 20633 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 20692 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || |||||||||||||||| ||||||||||| |||||| ||||||| ||||| Sbjct 20693 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCT 20752 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCG 136207 |||||||||||||| || |||||||||||| |||| | | ||||| ||| ||||| Sbjct 20753 AGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAG--GTATCAGTACTATGGCA 20810 Query 136208 TTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTC 136267 |||||||| ||||| ||||| || ||||| || | || | |||| |||||| | Sbjct 20811 TTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATT 20870 Query 136268 AACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 20871 AATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 20930 >seq1 Length=29327 Score = 616 bits (682), Expect = 2e-171 Identities = 742/1006 (74%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| |||||||| || ||| | || | Sbjct 5455 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5514 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 5515 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5574 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| |||||||| | ||| | |||||| ||||||| | ||||| || | Sbjct 5575 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAG 5634 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | || || || ||||||||||| || || || | Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || ||| | || || || |||||| | || || |||||| | |||| |||| | | Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTT---C 5811 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||||||||||||||| || || ||||| || || || | Sbjct 5812 AATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 5871 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| | || || || ||||||||||||| || |||||||| |||| Sbjct 5872 TCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 5931 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || ||||| | | || |||| || || ||||| ||||| || ||||| |||| Sbjct 5932 CTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTC 5991 Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471 |||||||||| || || ||| | | || | |||| |||| || |||||||||||||||| Sbjct 5992 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTA 6051 Query 138472 CAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAAC 138531 | |||||||||||||| | ||||||||| || ||||||| ||| || ||| | | Sbjct 6052 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACC 6111 Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591 | ||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||| Sbjct 6112 CAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCT 6171 Query 138592 TTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651 |||| |||||||| ||||| |||||| | || ||||||||| | ||||| || || | Sbjct 6172 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 6231 Query 138652 TGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATG 138711 ||| | |||| ||| | |||| | | ||| | || || |||||||| || || | Sbjct 6232 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACG 6291 Query 138712 ATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCA 138771 | ||||| || || |||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct 6292 ACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 6351 Query 138772 AGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACG 138831 | || ||||| | || |||||| | || || |||||||| || ||||| ||||| | Sbjct 6352 AAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6411 Query 138832 AAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| || | || ||||| || || | ||| | || |||||||| Sbjct 6412 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627924646659200