Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq2 661 0.0
seq1 616 2e-171
>seq2
Length=21306
Score = 661 bits (732), Expect = 0.0
Identities = 728/960 (76%), Gaps = 12/960 (1%)
Strand=Plus/Plus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | || || ||||| ||||| || || | || |||||||| ||
Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036
Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491
||||| ||||| ||| | | | || || |||| |||||| |||| ||||| || || |
Sbjct 20037 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094
Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551
|||| || |||||||| || || || ||||||||| |||| |||||| | |||||||| |
Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154
Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCC 135609
| || ||||| ||||| |||| ||| || ||| || ||||| | ||||| |||||
Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTATCC 20212
Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669
|| |||||||| || || ||||||| ||| |||| ||||||||||||||| ||||| |
Sbjct 20213 AATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 20272
Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729
|| | |||||| | | ||||| | |||||||||||| |||||||| || ||
Sbjct 20273 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 20332
Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789
||| ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||||||
Sbjct 20333 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 20392
Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849
||||||||| || ||||||| |||| ||||| ||| |||||||||||| || ||
Sbjct 20393 CGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 20452
Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909
|||||||| ||||| |||| |||| |||| |||||||| || |||||||| || |||||
Sbjct 20453 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 20512
Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969
||| || |||||||| || || ||||| || ||||| ||||| || ||| |||||||||
Sbjct 20513 TCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 20572
Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029
||| || | || || |||||| | | | || || || || ||||| || |
Sbjct 20573 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 20632
Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089
||||||| ||||||||||| ||||| ||||| || || || || ||||||||||| ||
Sbjct 20633 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 20692
Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149
|| || |||||||||||||||| ||||||||||| |||||| ||||||| |||||
Sbjct 20693 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCT 20752
Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCG 136207
|||||||||||||| || |||||||||||| |||| | | ||||| ||| |||||
Sbjct 20753 AGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAG--GTATCAGTACTATGGCA 20810
Query 136208 TTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTC 136267
|||||||| ||||| ||||| || ||||| || | || | |||| |||||| |
Sbjct 20811 TTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATT 20870
Query 136268 AACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327
|| || ||||| ||| | | || |||||| || |||||||| || ||||| || |||
Sbjct 20871 AATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 20930
>seq1
Length=29327
Score = 616 bits (682), Expect = 2e-171
Identities = 742/1006 (74%), Gaps = 6/1006 (1%)
Strand=Plus/Plus
Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934
||||||||||| | | || || || || ||||| |||||||| || ||| | || |
Sbjct 5455 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5514
Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994
|||| ||| ||||| || | || || ||| | || || ||||| ||||| || |
Sbjct 5515 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5574
Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054
|||| ||||| |||||||| | ||| | |||||| ||||||| | ||||| || |
Sbjct 5575 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAG 5634
Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114
|||| ||||||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694
Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174
|||||||| | || |||| ||| | || || || ||||||||||| || || || |
Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754
Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233
| || ||| | || || || |||||| | || || |||||| | |||| |||| | |
Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTT---C 5811
Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291
| | || || || || ||||||||||||||||| || || ||||| || || || |
Sbjct 5812 AATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 5871
Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351
||||||| ||||| | || || || ||||||||||||| || |||||||| ||||
Sbjct 5872 TCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 5931
Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411
| || || ||||| | | || |||| || || ||||| ||||| || ||||| ||||
Sbjct 5932 CTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTC 5991
Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471
|||||||||| || || ||| | | || | |||| |||| || ||||||||||||||||
Sbjct 5992 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTA 6051
Query 138472 CAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAAC 138531
| |||||||||||||| | ||||||||| || ||||||| ||| || ||| | |
Sbjct 6052 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACC 6111
Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591
| ||||||| |||||||||||||| ||||| ||||| ||||| | ||||| |||||||
Sbjct 6112 CAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCT 6171
Query 138592 TTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651
|||| |||||||| ||||| |||||| | || ||||||||| | ||||| || || |
Sbjct 6172 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 6231
Query 138652 TGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATG 138711
||| | |||| ||| | |||| | | ||| | || || |||||||| || || |
Sbjct 6232 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACG 6291
Query 138712 ATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCA 138771
| ||||| || || |||||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct 6292 ACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 6351
Query 138772 AGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACG 138831
| || ||||| | || |||||| | || || |||||||| || ||||| ||||| |
Sbjct 6352 AAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6411
Query 138832 AAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877
||||| || | || ||||| || || | ||| | || ||||||||
Sbjct 6412 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627924646659200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |