Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2 616 2e-171 seq1 556 1e-153 >seq2 Length=21306 Score = 616 bits (682), Expect = 2e-171 Identities = 739/997 (74%), Gaps = 8/997 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | || |||| | ||||||||||| | || |||||||| | Sbjct 19976 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 20035 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || | || ||| | || || | Sbjct 20036 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || ||||| || || | || |||||| | || || |||| Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154 Query 166232 ACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCC 166289 | || ||||| ||||| || | || || || || || || ||| | ||||| ||||| Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTATCC 20212 Query 166290 CATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGT 166349 || |||||||||||||| ||||||||||| | || || |||||||||| | || | Sbjct 20213 AATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 20272 Query 166350 AGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTA 166409 || | |||||| | | || | | |||||||||||||| ||||| | || Sbjct 20273 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 20332 Query 166410 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATC 166469 ||| || |||||||| ||||||||| || ||||| || || ||||||||||| || | Sbjct 20333 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 20392 Query 166470 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGG 166529 ||| || ||| || |||| || | |||||||| ||| ||||| | ||||| || || Sbjct 20393 CGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 20452 Query 166530 TATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCA 166589 || ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||||| Sbjct 20453 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 20512 Query 166590 CCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCA 166649 || || || ||| | || ||||| ||||||||||| || || || ||| || ||||| Sbjct 20513 TCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 20572 Query 166650 CGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACT 166708 || | || ||||| | | | | || | || ||||| |||| ||| ||| || Sbjct 20573 TGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 20631 Query 166709 ATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACT 166768 | ||||||| || |||||||| ||||| || || || ||||| || ||||||||||| | Sbjct 20632 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 20691 Query 166769 TCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCC 166828 | || || ||||||||||||| ||| ||||||||||| || ||| | |||||||||| Sbjct 20692 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCC 20751 Query 166829 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCAT 166888 | || || |||||||| || |||||||||||||||||| | ||| | || || ||||||| Sbjct 20752 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCAT 20811 Query 166889 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 166948 ||||||| || |||||||| || ||||| || | | ||| | || || ||||| | | Sbjct 20812 TCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTA 20871 Query 166949 ACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTA 167008 | |||||||| ||| | ||||||||||| || ||||||||||| ||||| || |||| Sbjct 20872 ATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20931 Query 167009 ATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||| ||||||||||| ||||| ||||||| ||| Sbjct 20932 ATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 556 bits (616), Expect = 1e-153 Identities = 736/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || ||||| || Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| |||||||| |||| | ||| ||| || |||||| Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCC---AGTTCCTATTTGGAAGGCTG-TAATTT 5620 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 5621 CTTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATG 5680 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | ||||| || | || || || ||| |||| Sbjct 5681 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 5740 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || || || || || |||| || ||||| || ||| | || ||||||||| | Sbjct 5741 TGTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGC 5800 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || ||||| || |||||||| || Sbjct 5801 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 5860 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || ||||| |||||||||||||||| || Sbjct 5861 TGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTT 5920 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| ||||| |||||||||||| | || || | || || || ||||| |||||||| Sbjct 5921 TGGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCT 5980 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||||||||| ||| | | |||| ||| ||||| | || || Sbjct 5981 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTAT 6040 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || || Sbjct 6041 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCG 6100 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||| ||||||||||||||||| ||||| || || Sbjct 6101 TGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTG 6160 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 6161 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 6220 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||| | || || || || Sbjct 6221 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCT 6280 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 ||||| || ||||| || ||||||||| || | ||||| || ||||| || ||||| || Sbjct 6281 ACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGAC 6340 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||| || ||||| || || | || ||||| | || || |||||||| | ||| Sbjct 6341 TTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 6400 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 6401 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567192839720800