Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2 625 4e-174 seq1 533 2e-146 seq43 91.5 2e-13 seq5 87.8 2e-12 >seq2 Length=21306 Score = 625 bits (692), Expect = 4e-174 Identities = 744/1004 (74%), Gaps = 4/1004 (0%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | |||||| | ||| |||| |||| | ||||| || || |||| ||||| Sbjct 19967 GTGGGGTCGCTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTT 20026 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | |||||| |||| || || | ||||||| Sbjct 20027 TGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCA 20085 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 | || ||||| || || || || ||||| || |||||||| || |||| || || | | Sbjct 20086 TTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 20145 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 | || ||||| || ||||| ||||| || ||||| |||| || || ||| | |||| Sbjct 20146 ACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACT 20205 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | ||||| || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 20206 TTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 20265 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 |||| | || | |||||| | |||| | | |||||||||||||||||||| | Sbjct 20266 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC 20325 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCT 180155 || || || |||||||||| || ||||| ||| || |||||||| ||||| || || Sbjct 20326 TTAGTTTCCGTCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCA 20384 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || | ||||| ||| | |||| || | |||||||| || ||||| | ||| Sbjct 20385 GCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATG 20444 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 || || || |||||||| || ||||||| |||| |||| ||||| || |||||||||||| Sbjct 20445 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATC 20504 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 20505 CTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 20564 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCC 180395 || ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 20565 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 20624 Query 180396 CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || | ||||||| || |||||||| ||||| || || || ||||| || || ||| Sbjct 20625 GCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCAT 20684 Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || || || || || |||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 20685 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACAC 20744 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||||| || || |||||||| || || |||||||| ||||| | || | || || Sbjct 20745 TTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACT 20804 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 |||||||||||||| || |||||||| || ||||| || | ||||| | ||||| ||| Sbjct 20805 ATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGT 20864 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 180695 || | || |||||||| || | ||||||| ||| || ||||||||||||||||| Sbjct 20865 GTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 20924 Query 180696 GAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 || ||||||||||| |||||||| || || || || |||| ||| Sbjct 20925 GAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 533 bits (590), Expect = 2e-146 Identities = 728/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| || ||||| |||||| | || || ||||||| | Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 5624 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 ||||| || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 5625 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 5684 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 5685 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5744 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || || || || || || | || || ||||| ||| | | |||||||| |||||||| Sbjct 5745 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 5804 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | ||||| || ||||| || || || || || || |||||||| || || Sbjct 5805 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGT 5863 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 |||||||| || || ||||| || || || || ||||||||||||| || ||||| || Sbjct 5864 TTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 5923 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| || || || || | ||| | ||||| | || || ||||||||||||||||| || Sbjct 5924 TGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAA 5983 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| ||||| ||| | |||| | || || || | || ||||| Sbjct 5984 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCA 6043 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| || || Sbjct 6044 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGC 6103 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||||||||| ||||| || ||||||||||| ||||| Sbjct 6104 TTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTC 6163 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 6164 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 6223 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | ||| | || || ||||| || Sbjct 6224 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACG 6283 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| || ||||| || || || ||||| | ||| | ||||| || || || ||||| || Sbjct 6284 TGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTT 6343 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 |||||| || || ||||| || || |||||| | || || ||| | || | ||||| Sbjct 6344 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 6403 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 6404 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 >seq43 Length=3920 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 1610 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 1669 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 1670 CCTACTTGGGGAG 1682 >seq5 Length=9041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 1413 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 1472 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 1473 CCTACTTGGGGAG 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610354659730920