Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2 542 3e-149
seq1 399 3e-106
>seq2
Length=21306
Score = 542 bits (600), Expect = 3e-149
Identities = 696/955 (73%), Gaps = 10/955 (1%)
Strand=Plus/Plus
Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502
|| |||||||||||| | ||||| || |||| | || ||| | | ||| || || |
Sbjct 20019 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTGTTTATTAT 20077
Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562
||| |||||||| || ||||| || ||||| || || || | ||||| || | || ||
Sbjct 20078 TGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 20137
Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622
| | | || || ||||| || ||||| ||||| || |||| | || ||||||||
Sbjct 20138 TCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGG 20197
Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682
| ||||| || ||||| |||||||||||| | |||||||||||||| || ||||||||
Sbjct 20198 TTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGG 20257
Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742
||||||| | | | | | |||||| | ||||| | | |||||||| | |
Sbjct 20258 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 20317
Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802
|||||| || | | | | || ||||| |||||||| ||||||||| || || ||
Sbjct 20318 GTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 20377
Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862
|| | ||||| |||||| ||||| | |||||| ||||||| || || |||||
Sbjct 20378 TGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGA 20437
Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922
||||||||| ||||| || || |||||||||||||| ||| | || ||||| || |||||
Sbjct 20438 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 20497
Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982
||||| || |||||||| || |||||| ||| ||||| || | ||||| || || |
Sbjct 20498 CAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCT 20557
Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042
|||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| |
Sbjct 20558 ATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 20617
Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102
|| || || | ||||| | ||||| ||||| |||||||| || || || |||||
Sbjct 20618 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 20677
Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162
|| || ||||| ||||| || | |||||||| |||||| ||||||||||| |
Sbjct 20678 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTC 20737
Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222
|||||||||||||||| | || ||||| || || | ||||| || || | |||||
Sbjct 20738 GTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTAT 20797
Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281
| | || |||||||||||| | ||||||||||| ||||||||||| || |||||| || |
Sbjct 20798 CAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCA 20857
Query 170282 A---CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGG 170338
| || || | | || |||| |||| || | ||| | || ||| | |||||||
Sbjct 20858 AGGCCGTGTAATTAAT----ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGG 20913
Query 170339 AAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393
|||||||||||||| | ||||| || |||||||| ||||| ||||| ||| |||
Sbjct 20914 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 399 bits (442), Expect = 3e-106
Identities = 710/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588
|||||| || | || ||||||||| ||| || ||||| || || |||| ||||| |||
Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504
Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648
|| || || | |||||||| || | | | || ||||||||| ||| || |||||
Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564
Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708
|| || ||||||||||| ||||| | || || ||| | || || ||||| ||| ||
Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 5624
Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768
||||| |||||||| || |||| | | | ||| | | |||| || |||||
Sbjct 5625 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 5684
Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828
|||||||||||||| ||| |||||||| ||| | || ||| | |||| |||||
Sbjct 5685 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5744
Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888
|| | ||||| | |||||||| |||||||||||| | | ||||||||| | || ||
Sbjct 5745 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 5804
Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948
||| | ||||||| || ||| |||||||||||| || || || || |
Sbjct 5805 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTT 5864
Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008
| || ||||| ||||||||||| ||| |||||||||| ||||| || |||
Sbjct 5865 TCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 5924
Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068
|| ||||| || ||| | | ||| | || | ||||| || || || || ||||
Sbjct 5925 GTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAAC 5984
Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128
|||||||| |||||||| ||||| || || | || | || || |||| || ||||||
Sbjct 5985 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 6044
Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188
||||| || || | || || || | ||||| || |||| |
Sbjct 6045 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 6087
Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248
|||| ||||| ||||| ||| | || || || | |||||||| || ||| |
Sbjct 6088 CAAA----TACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTC 6143
Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308
|| || ||| | || ||||| || || ||||| ||||||| || || ||| | | |||
Sbjct 6144 ACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6203
Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368
|| ||| ||||||| || || || || | ||| | |||| || | || | ||
Sbjct 6204 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 6263
Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428
||| | || || ||||| | || ||||| || || ||||| || || | ||||| |||
Sbjct 6264 GGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 6323
Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488
|| || || || |||||||||||||| || ||||| || | || |||||||| | ||
Sbjct 6324 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCT 6383
Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548
|||||| | | || || || ||||| ||| | ||||||| || || || |||||
Sbjct 6384 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 6443
Query 171549 AGAGGTAACGCACTTTAA 171566
| || ||||| ||||||
Sbjct 6444 CGTGGAAACGCTCTTTAA 6461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579172812596320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |