Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq2 675 0.0
seq1 563 1e-155
>seq2
Length=21306
Score = 675 bits (748), Expect = 0.0
Identities = 733/967 (76%), Gaps = 4/967 (0%)
Strand=Plus/Plus
Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870
||||| || || | || ||||| || ||| ||||||||||||| || ||| | |||||
Sbjct 20004 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 20062
Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929
||||| || || | |||||| | || ||||| || || || || |||||||||||||
Sbjct 20063 T-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTG 20121
Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989
|||||||| | || || || | || || ||||| || ||||| ||||| || ||||
Sbjct 20122 AACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTA 20181
Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049
| || || || ||| | ||||| || || ||||||||||| |||||| |||||||||
Sbjct 20182 CTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAAT 20241
Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109
|| | ||||| |||||||||| |||| | || | |||||| | | ||| | |
Sbjct 20242 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 20301
Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169
|||||||||||||||||||| || || |||||| |||||||| ||||||||| ||
Sbjct 20302 GTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 20361
Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229
|||| || || || || |||||||| || |||| || ||| || |||| || | ||||
Sbjct 20362 TTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTC 20421
Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289
|||| || ||||| | ||||| || || || ||||| || ||||||| |||| | |
Sbjct 20422 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 20481
Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349
| ||||| || |||||||||||||| ||||| || || || ||| | ||||| ||||| |
Sbjct 20482 TATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTG 20541
Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409
|||| |||||||| || |||||||| ||||| ||||| |||| |||||| || |
Sbjct 20542 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 20601
Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469
| |||||||| |||| ||| || || | ||||||| || |||||||| |||||||
Sbjct 20602 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 20661
Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529
| || || || || |||||||| ||||| ||||| || ||||||||||||| ||| |
Sbjct 20662 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 20721
Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589
|||||||||| ||||| || ||||||||||| ||||| |||||||| || || |||||||
Sbjct 20722 TCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 20781
Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649
| || || | ||| | || |||||||||||||| || |||||||| || ||||| |
Sbjct 20782 TTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAAT 20841
Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709
| | | ||| | || || ||||| | || |||||||| || || ||||||| |||
Sbjct 20842 CTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTA 20901
Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769
|| ||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||
Sbjct 20902 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTG 20961
Query 164770 CTGCTGA 164776
||| |||
Sbjct 20962 CTGTTGA 20968
>seq1
Length=29327
Score = 563 bits (624), Expect = 1e-155
Identities = 731/1004 (73%), Gaps = 6/1004 (1%)
Strand=Plus/Plus
Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265
||||||||| | | || |||||||||||||| |||||||| || || | || |||
Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516
Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325
|| ||| ||| | ||| | || |||||| | || || || || || | || |||
Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576
Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383
||||| || |||||||| ||||||||| |||| || || || ||||||| | || ||||
Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAG 5634
Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443
|||||||||| || | | | | |||||| | || | || ||||||||||| || |
Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694
Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503
|||| ||||| | ||| ||| | || || || ||| ||||||| || || || |
Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754
Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562
| ||||| | ||||| ||||||||| | ||||| ||||| | || || ||| || |
Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT 5814
Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622
| || || || ||||| || || |||||||| || || |||||||||||| || ||
Sbjct 5815 -TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTC 5873
Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682
|| || || || || || || || ||||||| || || || ||| || || |||||
Sbjct 5874 CTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 5933
Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742
|| || || ||| | ||||| | |||||||| ||||| ||||| |||| || ||||||
Sbjct 5934 ATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCAT 5993
Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802
|||||||| ||||| ||| | |||| | ||| ||||| | || || ||||||| |||
Sbjct 5994 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACT 6053
Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862
||||| |||||| | | | |||||||||| | ||||||||| || || ||| || |
Sbjct 6054 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCA 6113
Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922
||||||| |||||||||||| || ||||| ||||| ||||| || ||||| || |||||
Sbjct 6114 ACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTT 6173
Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982
|| |||| ||| ||||| | ||||| |||||||||||| | ||||| || || |
Sbjct 6174 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 6233
Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042
||| | |||| ||| | | || | | ||| | || || ||||| ||||| || |||
Sbjct 6234 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGAC 6293
Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102
|| || || || || || | ||||| ||||| || || ||||| || |||||||| |||
Sbjct 6294 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 6353
Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162
|| ||||| || || |||||| |||| |||||| |||| | ||||| || |||||
Sbjct 6354 AATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6413
Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206
||| || | |||||||| || ||||| || | || ||||| ||
Sbjct 6414 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556886351304120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |