Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2 675 0.0 seq1 563 1e-155 >seq2 Length=21306 Score = 675 bits (748), Expect = 0.0 Identities = 733/967 (76%), Gaps = 4/967 (0%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || | || ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 20004 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 20062 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || | |||||| | || ||||| || || || || ||||||||||||| Sbjct 20063 T-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTG 20121 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 |||||||| | || || || | || || ||||| || ||||| ||||| || |||| Sbjct 20122 AACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTA 20181 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || || ||| | ||||| || || ||||||||||| |||||| ||||||||| Sbjct 20182 CTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAAT 20241 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| |||||||||| |||| | || | |||||| | | ||| | | Sbjct 20242 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 20301 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 |||||||||||||||||||| || || |||||| |||||||| ||||||||| || Sbjct 20302 GTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 20361 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || |||| || ||| || |||| || | |||| Sbjct 20362 TTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTC 20421 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| || ||||| | ||||| || || || ||||| || ||||||| |||| | | Sbjct 20422 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 20481 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| || |||||||||||||| ||||| || || || ||| | ||||| ||||| | Sbjct 20482 TATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTG 20541 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| |||||||| || |||||||| ||||| ||||| |||| |||||| || | Sbjct 20542 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 20601 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || || | ||||||| || |||||||| ||||||| Sbjct 20602 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 20661 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | || || || || |||||||| ||||| ||||| || ||||||||||||| ||| | Sbjct 20662 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 20721 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| ||||| || ||||||||||| ||||| |||||||| || || ||||||| Sbjct 20722 TCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 20781 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 | || || | ||| | || |||||||||||||| || |||||||| || ||||| | Sbjct 20782 TTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAAT 20841 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| | || || ||||| | || |||||||| || || ||||||| ||| Sbjct 20842 CTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTA 20901 Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769 || ||||||||||||||||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 20902 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTG 20961 Query 164770 CTGCTGA 164776 ||| ||| Sbjct 20962 CTGTTGA 20968 >seq1 Length=29327 Score = 563 bits (624), Expect = 1e-155 Identities = 731/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| |||||||| || || | || ||| Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || |||||||| ||||||||| |||| || || || ||||||| | || |||| Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAG 5634 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||||||||| || | | | | |||||| | || | || ||||||||||| || | Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||| ||||| | ||| ||| | || || || ||| ||||||| || || || | Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 | ||||| | ||||| ||||||||| | ||||| ||||| | || || ||| || | Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT 5814 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| || || |||||||| || || |||||||||||| || || Sbjct 5815 -TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTC 5873 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || || || || || ||||||| || || || ||| || || ||||| Sbjct 5874 CTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 5933 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || || ||| | ||||| | |||||||| ||||| ||||| |||| || |||||| Sbjct 5934 ATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCAT 5993 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| ||| | |||| | ||| ||||| | || || ||||||| ||| Sbjct 5994 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACT 6053 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 ||||| |||||| | | | |||||||||| | ||||||||| || || ||| || | Sbjct 6054 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCA 6113 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||||||| || ||||| ||||| ||||| || ||||| || ||||| Sbjct 6114 ACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTT 6173 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 6174 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 6233 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | | || | | ||| | || || ||||| ||||| || ||| Sbjct 6234 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGAC 6293 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || || || || || || | ||||| ||||| || || ||||| || |||||||| ||| Sbjct 6294 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 6353 Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162 || ||||| || || |||||| |||| |||||| |||| | ||||| || ||||| Sbjct 6354 AATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6413 Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| || | |||||||| || ||||| || | || ||||| || Sbjct 6414 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556886351304120