Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 495 4e-135 seq1 399 3e-106 >seq2 Length=21306 Score = 495 bits (548), Expect = 4e-135 Identities = 686/959 (72%), Gaps = 10/959 (1%) Strand=Plus/Plus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| | || ||||| ||||| | |||||||| || | || ||| | | | Sbjct 20011 TTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTGT 20070 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||||| || ||||| || ||||| || || || | ||||| ||| Sbjct 20071 TTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 20130 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||| | | || || ||||| || ||||| ||||| || |||| | || | Sbjct 20131 CTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAG 20190 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | || ||| | ||||| || || || |||||||||||| |||| ||||||||||| |||| Sbjct 20191 CTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACA 20250 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 |||||||||||||| | | | | | |||||| | | ||| | | ||||||| Sbjct 20251 ATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGG 20310 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | ||||||| || | | | | |||||| |||| ||||| ||| ||||||| Sbjct 20311 GTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATT 20370 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| ||||| |||| || ||||| ||| | | || ||| | ||||| || | Sbjct 20371 CAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 20430 Query 172274 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAG 172333 | |||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| | Sbjct 20431 TTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGG 20490 Query 172334 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAG 172393 | ||||| ||||| || |||||||| || |||||| ||| ||||| || | || || | Sbjct 20491 CTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCG 20550 Query 172394 GATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAA 172453 | || ||||| || ||||| ||||| || || || ||| | | ||||| || || | Sbjct 20551 GTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 20610 Query 172454 CTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACA 172513 | ||| ||||| || | || |||| ||||| ||||| |||||||| || || | Sbjct 20611 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATA 20670 Query 172514 TAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACT 172573 | ||||| || || ||||| ||||| || | |||||||| |||||| ||||||||||| Sbjct 20671 TCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 20730 Query 172574 CAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTA 172633 | | | |||||||||||||| | || ||||| || || | ||||| || || Sbjct 20731 CGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTT 20790 Query 172634 TGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAG 172693 | |||||| |||| |||||||||||||| || |||||||| || |||||||| || || | Sbjct 20791 TAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTG 20850 Query 172694 AT-GCTAACG----GTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCT 172748 || || || | |||| || ||| |||| ||| || | ||| | || ||||| Sbjct 20851 ATAGCCAAGGCCGTGTAA-----TTAATACTTGGGCTGATATTATCAACCGTGCTAACCT 20905 Query 172749 AGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||||||||||||| | ||||| || |||||||| |||| || ||| ||| Sbjct 20906 TGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTG 20964 >seq1 Length=29327 Score = 399 bits (442), Expect = 3e-106 Identities = 711/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 5624 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 ||||| ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 5625 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 5684 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 5685 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5744 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | ||||| | |||||||| |||||||||||| | ||||| |||||| | || || Sbjct 5745 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 5804 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| || || || || | Sbjct 5805 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTT 5864 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 | || | || || |||||||||||| |||||||||| |||||| || ||| Sbjct 5865 TCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 5924 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || ||||| || ||| | | ||| | || | ||||| || || || || |||| Sbjct 5925 GTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAAC 5984 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| ||||| || || | || | || || ||||| || |||||| Sbjct 5985 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 6044 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| || | Sbjct 6045 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGG-----TG 6087 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 ||| | | |||| | || ||| | || || || | |||||||| ||| ||| | Sbjct 6088 CAA---ATACATTTC-GTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTC 6143 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 6144 ACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6203 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 6204 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 6263 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||| | || || ||||| | || |||||||| || ||||| || || | ||||| ||| Sbjct 6264 GGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 6323 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || |||||||||||||| || ||||| || | || |||||||| | || Sbjct 6324 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCT 6383 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 6384 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 6443 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 6444 CGTGGAAACGCTCTTTAA 6461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588010602415280