Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2 598 5e-166 seq1 529 2e-145 >seq2 Length=21306 Score = 598 bits (662), Expect = 5e-166 Identities = 732/992 (74%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | ||| | ||||| ||||| || || | |||||| | || ||||| Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | |||||||| ||||| ||||| || || ||| Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| |||||||| || ||||| ||| || ||||| || || ||||||||||| || | | Sbjct 20336 TCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || |||| || | |||||||| ||| ||||| | ||||| | || | Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | || |||||||| || || || ||||| ||||| ||||| || |||||||| ||||| | Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| ||||| || ||| | || | || || || |||| ||| || || | | Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 |||||| ||||||||||| ||||| || || || ||||| || || |||||||| || | Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 | || ||||||||||||||||| ||||||||||| ||||| || ||||||||||| | Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATT 163220 |||| |||||||| || || |||||||| || | ||| || ||| || |||||||| Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTG--CTTTAGGTATCAGTACTATGGCATT 20812 Query 163221 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 163280 |||||| || |||||||| || ||||| || | ||||| | || || ||||| | || Sbjct 20813 CAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAA 20872 Query 163281 CACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAA 163340 || ||||| || || | |||||||| | ||||||||||||||||| || || || Sbjct 20873 TACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 20932 Query 163341 TGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 |||||| |||||||| || || || || |||| Sbjct 20933 TGCTCATAACTTCCCTCTAGATCTAGCTGCTG 20964 >seq1 Length=29327 Score = 529 bits (586), Expect = 2e-145 Identities = 735/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || |||||||| ||| | |||||||| || Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| |||||||| |||| | ||||||| | || || |||||| | Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 5624 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 ||||| || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 5625 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTACTATGGGG 5683 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || |||| |||||| Sbjct 5684 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5743 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || || || || || |||| || || ||||||||| | || |||||||| |||||||| Sbjct 5744 TGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCG 5803 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || |||||||| || |||||||| || | Sbjct 5804 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTG 5862 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||| || || || || || || || || || |||||||||| || || ||||| Sbjct 5863 TTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTG 5922 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || ||||| || || |||||| || | || |||||||||||||||| ||||| ||| Sbjct 5923 GTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGA 5982 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || ||||||||||||||||| ||| || | |||| || ||||||| ||||||| Sbjct 5983 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTC 6042 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || ||| | Sbjct 6043 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTG 6102 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| || ||||| ||||||||||| |||||||| |||| Sbjct 6103 CTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGT 6162 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 6163 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 6222 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || | || || || || | Sbjct 6223 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTAC 6282 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| ||||| || || ||| || ||| | ||||| ||||||||||| || ||||||| Sbjct 6283 GTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTT 6342 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 |||| ||||| || || |||| |||||||| | || || ||| | || | || | Sbjct 6343 TCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 6402 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 6403 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 6460 Query 164637 AT 164638 || Sbjct 6461 AT 6462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557545505794600