Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2 621 4e-173 seq1 578 4e-160 >seq2 Length=21306 Score = 621 bits (688), Expect = 4e-173 Identities = 724/984 (74%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || || || | |||||||| || |||| ||||| || ||| ||||||||||| Sbjct 19986 TGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 20045 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | |||| | ||||| || || || |||||| | | |||||||| || || Sbjct 20046 ACCTTATTGACCGCAA-CTTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGA 20104 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | || || ||||| || ||||| Sbjct 20105 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTC 20164 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||||| ||||| ||| | ||||| ||||| || |||||||| Sbjct 20165 AGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGC 20224 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 |||| || | || || ||||| |||||||||||||||| |||| | ||| | ||||| Sbjct 20225 AGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTT 20284 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || ||||||||||||||||| || || |||||| ||||| Sbjct 20285 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTAT 20344 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || | ||||| ||| | Sbjct 20345 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 20404 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || | |||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 20405 GATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 20464 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||||| |||| |||| ||||| || |||||||||||||| ||||| || || || || Sbjct 20465 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 20524 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | ||||| ||||| |||||||||||||| || |||||||| ||||| ||||| |||| Sbjct 20525 GTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 20584 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 20585 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 20644 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| || ||||||||||| || || || |||| Sbjct 20645 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 20704 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || ||||||||||| || ||| | ||||||||| | || || ||||| Sbjct 20705 CTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCC 20764 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || |||||||||| ||||||||| || || Sbjct 20765 TGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGG 20824 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| || ||||| ||| | ||||||| || || | ||||||||| || Sbjct 20825 TTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGA 20884 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 20885 TATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 20944 Query 168056 CCCTCTCGACCTTGCTGCTGCTGA 168079 |||||| || || ||||||| ||| Sbjct 20945 CCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 578 bits (640), Expect = 4e-160 Identities = 733/1003 (73%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| |||||||| || || | || ||| Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTA-CTGCGGCAGT 168673 ||||| || |||||||| ||||||||| |||| ||| || ||||||| | || ||||| Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGT 5635 Query 168674 TAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACA 168733 | |||||| || || | | | |||||| | || | || ||||||||||| ||||| Sbjct 5636 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACA 5695 Query 168734 AGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGG 168793 ||| ||||| | ||||||||| | || || || ||| ||||||| || || || || Sbjct 5696 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGG 5755 Query 168794 GGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 168852 ||||| | ||||| ||||||||| | ||||| ||||| || || || ||| || | Sbjct 5756 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT- 5814 Query 168853 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 168912 | || || || ||||| || || |||||||| || || |||||||||||| || || | Sbjct 5815 TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCC 5874 Query 168913 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 168972 | || || || || || || || ||||||| || || || ||| || || |||| | Sbjct 5875 TGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTA 5934 Query 168973 TCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATA 169032 | || ||||| | ||||| | |||||||| ||||| ||||| ||||| |||||||||| Sbjct 5935 TATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATA 5994 Query 169033 TGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAG 169092 ||||||| || || ||| | ||||| | || ||||| | || |||||||||| ||| | Sbjct 5995 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTG 6054 Query 169093 TAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCA 169152 |||| |||||| | | | |||||||||| |||||||| || || ||| || | Sbjct 6055 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAA 6114 Query 169153 CTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 169212 |||| | || || |||||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 6115 CTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTG 6174 Query 169213 GTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 169272 | |||| || ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 6175 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 6234 Query 169273 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 169332 || | |||| ||| | | || | | ||| | || || ||||| ||||| || |||| Sbjct 6235 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACT 6294 Query 169333 TTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGA 169392 | ||||| || || || | ||||| |||||||| || |||||||| ||||||||||| | Sbjct 6295 TCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 6354 Query 169393 ACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGA 169452 | || || || ||||||||| |||| || ||| | || || ||||| |||||||| | Sbjct 6355 ATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 6414 Query 169453 ACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || || | ||||||||||| || || || || || || || || Sbjct 6415 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560569297025200