Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq2 621 4e-173
seq1 578 4e-160
>seq2
Length=21306
Score = 621 bits (688), Expect = 4e-173
Identities = 724/984 (74%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156
||| | || || || | |||||||| || |||| ||||| || ||| |||||||||||
Sbjct 19986 TGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 20045
Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215
|| || | | |||| | ||||| || || || |||||| | | |||||||| || ||
Sbjct 20046 ACCTTATTGACCGCAA-CTTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGA 20104
Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275
|| |||||||| || ||||| ||| |||| || || | || || ||||| || |||||
Sbjct 20105 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTC 20164
Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335
||||| || ||||| ||||| ||||| ||| | ||||| ||||| || ||||||||
Sbjct 20165 AGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGC 20224
Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395
|||| || | || || ||||| |||||||||||||||| |||| | ||| | |||||
Sbjct 20225 AGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTT 20284
Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455
| | |||| | | || ||||||||||||||||| || || |||||| |||||
Sbjct 20285 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTAT 20344
Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515
||| || ||||| ||||||||| || ||||| || || || || | ||||| ||| |
Sbjct 20345 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 20404
Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575
|||| || | |||||||| ||| ||||| | |||||||| || || ||||||||
Sbjct 20405 GATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 20464
Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635
||||||| |||| |||| ||||| || |||||||||||||| ||||| || || || ||
Sbjct 20465 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 20524
Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695
| | ||||| ||||| |||||||||||||| || |||||||| ||||| ||||| ||||
Sbjct 20525 GTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 20584
Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755
|| ||| || | | |||||||| |||| ||| || || | ||||||| ||
Sbjct 20585 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 20644
Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815
|||||| || ||||| || ||||| ||||| || ||||||||||| || || || ||||
Sbjct 20645 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 20704
Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875
||||||||| || ||||||||||| || ||| | ||||||||| | || || |||||
Sbjct 20705 CTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCC 20764
Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935
||| || |||||||||| ||||||||| || ||
Sbjct 20765 TGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGG 20824
Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995
|||||| || ||||| ||| | ||||||| || || | ||||||||| ||
Sbjct 20825 TTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGA 20884
Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055
| ||||||||||| || ||||||||||||||||| || ||||||||||| |||||
Sbjct 20885 TATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 20944
Query 168056 CCCTCTCGACCTTGCTGCTGCTGA 168079
|||||| || || ||||||| |||
Sbjct 20945 CCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 578 bits (640), Expect = 4e-160
Identities = 733/1003 (73%), Gaps = 4/1003 (0%)
Strand=Plus/Plus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| |||||||||||||| |||||||| || || | || |||
Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| | ||| | || |||||| | || || || | || || || |||
Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTA-CTGCGGCAGT 168673
||||| || |||||||| ||||||||| |||| ||| || ||||||| | || |||||
Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGT 5635
Query 168674 TAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACA 168733
| |||||| || || | | | |||||| | || | || ||||||||||| |||||
Sbjct 5636 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACA 5695
Query 168734 AGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGG 168793
||| ||||| | ||||||||| | || || || ||| ||||||| || || || ||
Sbjct 5696 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGG 5755
Query 168794 GGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 168852
||||| | ||||| ||||||||| | ||||| ||||| || || || ||| || |
Sbjct 5756 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT- 5814
Query 168853 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 168912
| || || || ||||| || || |||||||| || || |||||||||||| || || |
Sbjct 5815 TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCC 5874
Query 168913 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 168972
| || || || || || || || ||||||| || || || ||| || || |||| |
Sbjct 5875 TGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTA 5934
Query 168973 TCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATA 169032
| || ||||| | ||||| | |||||||| ||||| ||||| ||||| ||||||||||
Sbjct 5935 TATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATA 5994
Query 169033 TGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAG 169092
||||||| || || ||| | ||||| | || ||||| | || |||||||||| ||| |
Sbjct 5995 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTG 6054
Query 169093 TAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCA 169152
|||| |||||| | | | |||||||||| |||||||| || || ||| || |
Sbjct 6055 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAA 6114
Query 169153 CTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 169212
|||| | || || |||||||| ||||| ||||| ||||| || ||||| || |||||||
Sbjct 6115 CTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTG 6174
Query 169213 GTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 169272
| |||| || ||||| | ||||| |||||||||||| | ||||| || || | |
Sbjct 6175 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 6234
Query 169273 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 169332
|| | |||| ||| | | || | | ||| | || || ||||| ||||| || ||||
Sbjct 6235 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACT 6294
Query 169333 TTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGA 169392
| ||||| || || || | ||||| |||||||| || |||||||| ||||||||||| |
Sbjct 6295 TCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 6354
Query 169393 ACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGA 169452
| || || || ||||||||| |||| || ||| | || || ||||| |||||||| |
Sbjct 6355 ATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 6414
Query 169453 ACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495
|| || | ||||||||||| || || || || || || || ||
Sbjct 6415 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560569297025200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |