Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2 636 2e-177 seq1 558 4e-154 >seq2 Length=21306 Score = 636 bits (704), Expect = 2e-177 Identities = 730/976 (75%), Gaps = 8/976 (1%) Strand=Plus/Plus Query 181814 TACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGC 181873 |||| | || ||||| || |||| ||||||||||| |||||||||| || | ||| | Sbjct 19997 TACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 20056 Query 181874 GGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTA 181932 ||||| ||||| || || |||| ||| | || || ||||| || ||||| || |||| Sbjct 20057 CGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTA 20115 Query 181933 TCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTG 181992 | || ||||| || |||| || || | || || ||||| || ||||| ||||| || Sbjct 20116 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTA 20175 Query 181993 TCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTG 182052 | || | || || || ||| | ||||| || ||||| |||||||| || || ||| Sbjct 20176 TTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTG 20235 Query 182053 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCA 182112 |||| ||| | || || |||||||||| |||| ||||| | |||||| | | || Sbjct 20236 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG-- 20293 Query 182113 TCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCT 182169 | || || | ||||||| ||||||||||| ||| || ||| | |||||||| || | Sbjct 20294 TGTA-GCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTT 20352 Query 182170 GGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATC 182229 |||| ||| ||||| || ||||| || || || || | ||||| ||||| |||| | Sbjct 20353 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACC 20412 Query 182230 CTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289 | | |||||||| || || |||| ||||| || ||||| || || || ||||||| Sbjct 20413 CAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 20472 Query 182290 ATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTG 182349 ||| | || ||||| |||||||||||||| ||||||||||| || |||||||| || | Sbjct 20473 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCG 20532 Query 182350 TAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTT 182409 |||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 20533 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTA 20592 Query 182410 CACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAG 182469 | || | || || || || | || || || | ||||||| |||||||||| Sbjct 20593 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 20652 Query 182470 AAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAAT 182529 | ||||| || ||||| ||||| || || ||||| || || || || ||||||||||||| Sbjct 20653 AGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAAT 20712 Query 182530 ACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTG 182589 | || ||||||||||| ||||| || ||||||||||| ||||| |||||||| || | Sbjct 20713 ATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGG 20772 Query 182590 GAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACT 182649 | |||||||| || || | ||| || || |||||||||||||| || |||||||| | Sbjct 20773 GTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATT 20832 Query 182650 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGA 182709 | ||||| || | ||||| | || || ||||| |||| |||||||| ||| | | | Sbjct 20833 TTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCA 20892 Query 182710 ACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAG 182769 |||||||| ||||||||||||||||||||||| ||||| || || |||||||| |||| Sbjct 20893 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 20952 Query 182770 ATCTTGCTGCTGCTGA 182785 |||| ||||||| ||| Sbjct 20953 ATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 558 bits (618), Expect = 4e-154 Identities = 730/1008 (72%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || ||||| || || | || || Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 ||||||||||| | || ||||||| | ||||| ||| |||||| || || || || Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGT 5635 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | |||||| | ||||||| ||||||||||| | || Sbjct 5636 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACA 5695 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||||| ||| | || || || |||| |||||| || || || || Sbjct 5696 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGG 5755 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || |||| || || ||||||||| | || || ||||| |||||||| | || | Sbjct 5756 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAATT 5815 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || |||||||| || |||||||||||||| ||||||||| Sbjct 5816 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 5875 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| || |||||| |||||||||||||||||||| || |||||||| || Sbjct 5876 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 5935 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||||||||| | | || |||| || || || || |||||| | ||||| || ||||| Sbjct 5936 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 5995 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| ||| || | || | || | || | ||||| ||||||| || || Sbjct 5996 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 6055 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 ||| ||||| || | ||||||||| || ||||| ||||| || ||| | | || Sbjct 6056 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 6115 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 ||||| ||||| || ||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 6116 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 6175 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 |||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | || Sbjct 6176 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 6235 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | || |||| | | || | || || || || ||||| || || || Sbjct 6236 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 6295 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091 || ||| || || | ||||| |||||||| ||||||||||| |||||||| || || Sbjct 6296 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 6355 Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151 || || | || ||||| | || || ||| | || || ||||| || ||||| || Sbjct 6356 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6415 Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 6416 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 6463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611653770037400