Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq2 636 2e-177
seq1 558 4e-154
>seq2
Length=21306
Score = 636 bits (704), Expect = 2e-177
Identities = 730/976 (75%), Gaps = 8/976 (1%)
Strand=Plus/Plus
Query 181814 TACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGC 181873
|||| | || ||||| || |||| ||||||||||| |||||||||| || | ||| |
Sbjct 19997 TACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 20056
Query 181874 GGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTA 181932
||||| ||||| || || |||| ||| | || || ||||| || ||||| || ||||
Sbjct 20057 CGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTA 20115
Query 181933 TCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTG 181992
| || ||||| || |||| || || | || || ||||| || ||||| ||||| ||
Sbjct 20116 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTA 20175
Query 181993 TCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTG 182052
| || | || || || ||| | ||||| || ||||| |||||||| || || |||
Sbjct 20176 TTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTG 20235
Query 182053 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCA 182112
|||| ||| | || || |||||||||| |||| ||||| | |||||| | | ||
Sbjct 20236 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG-- 20293
Query 182113 TCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCT 182169
| || || | ||||||| ||||||||||| ||| || ||| | |||||||| || |
Sbjct 20294 TGTA-GCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTT 20352
Query 182170 GGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATC 182229
|||| ||| ||||| || ||||| || || || || | ||||| ||||| |||| |
Sbjct 20353 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACC 20412
Query 182230 CTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289
| | |||||||| || || |||| ||||| || ||||| || || || |||||||
Sbjct 20413 CAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 20472
Query 182290 ATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTG 182349
||| | || ||||| |||||||||||||| ||||||||||| || |||||||| || |
Sbjct 20473 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCG 20532
Query 182350 TAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTT 182409
|||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || |||
Sbjct 20533 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTA 20592
Query 182410 CACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAG 182469
| || | || || || || | || || || | ||||||| ||||||||||
Sbjct 20593 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 20652
Query 182470 AAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAAT 182529
| ||||| || ||||| ||||| || || ||||| || || || || |||||||||||||
Sbjct 20653 AGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAAT 20712
Query 182530 ACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTG 182589
| || ||||||||||| ||||| || ||||||||||| ||||| |||||||| || |
Sbjct 20713 ATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGG 20772
Query 182590 GAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACT 182649
| |||||||| || || | ||| || || |||||||||||||| || |||||||| |
Sbjct 20773 GTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATT 20832
Query 182650 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGA 182709
| ||||| || | ||||| | || || ||||| |||| |||||||| ||| | | |
Sbjct 20833 TTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCA 20892
Query 182710 ACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAG 182769
|||||||| ||||||||||||||||||||||| ||||| || || |||||||| ||||
Sbjct 20893 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 20952
Query 182770 ATCTTGCTGCTGCTGA 182785
|||| ||||||| |||
Sbjct 20953 ATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 558 bits (618), Expect = 4e-154
Identities = 730/1008 (72%), Gaps = 2/1008 (0%)
Strand=Plus/Plus
Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252
||||||||| | | || || || || ||||| || ||||| || || | || ||
Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516
Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576
Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371
||||||||||| | || ||||||| | ||||| ||| |||||| || || || ||
Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGT 5635
Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431
|| || |||||| | | | | |||||| | ||||||| ||||||||||| | ||
Sbjct 5636 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACA 5695
Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491
||| || ||| || ||||| ||| | || || || |||| |||||| || || || ||
Sbjct 5696 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGG 5755
Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551
|| |||| || || ||||||||| | || || ||||| |||||||| | || |
Sbjct 5756 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAATT 5815
Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611
|| ||||| ||||| || || |||||||| || |||||||||||||| |||||||||
Sbjct 5816 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 5875
Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671
|| |||||||| || |||||| |||||||||||||||||||| || |||||||| ||
Sbjct 5876 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 5935
Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731
||||||||| | | || |||| || || || || |||||| | ||||| || |||||
Sbjct 5936 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 5995
Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791
|||||||||||| ||| || | || | || | || | ||||| ||||||| || ||
Sbjct 5996 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 6055
Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851
||| ||||| || | ||||||||| || ||||| ||||| || ||| | | ||
Sbjct 6056 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 6115
Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911
||||| ||||| || ||||| ||||| || ||||| || || ||||| |||||||| ||
Sbjct 6116 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 6175
Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971
|||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | ||
Sbjct 6176 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 6235
Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031
| | ||| | | || |||| | | || | || || || || ||||| || || ||
Sbjct 6236 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 6295
Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091
|| ||| || || | ||||| |||||||| ||||||||||| |||||||| || ||
Sbjct 6296 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 6355
Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151
|| || | || ||||| | || || ||| | || || ||||| || ||||| ||
Sbjct 6356 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6415
Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199
||||||| || |||||||| |||| | || || ||||||| |||
Sbjct 6416 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 6463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611653770037400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |