Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2 688 0.0 seq1 560 1e-154 >seq2 Length=21306 Score = 688 bits (762), Expect = 0.0 Identities = 735/968 (76%), Gaps = 2/968 (0%) Strand=Plus/Plus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 ||| | ||||||||||| |||| ||||| |||||| | |||||||| || | || Sbjct 19998 ACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 20057 Query 164845 GCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 || || | ||| ||||||| ||| ||||| || ||||| || || || ||||||||||| Sbjct 20058 GCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTAT 20116 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 |||||||||||| | || |||||| | ||||| ||||| || ||||| ||||| | | Sbjct 20117 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 20176 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 ||| ||||| || ||||| | ||||| ||||| ||||||||||| ||| || | || Sbjct 20177 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGA 20236 Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGT 165083 ||||||||| ||||| ||||||||||| | | |||| | |||||| | | ||||| Sbjct 20237 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 20296 Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143 |||||| |||||||||||||||||||| || || ||| || |||||||| |||||||| Sbjct 20297 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 20356 Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203 | || |||||| || ||||| || |||||| |||| |||||| || |||| || | Sbjct 20357 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 20416 Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 165263 |||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| || Sbjct 20417 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 20476 Query 165264 GTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGC 165323 | | || ||||| || || || ||||| ||||||||||| || |||||| | ||||| || Sbjct 20477 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGC 20536 Query 165324 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACT 165383 ||| |||||||| || || || ||| |||||||||||| | || ||||| | Sbjct 20537 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 20596 Query 165384 CGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGA 165443 || | || || || |||| || | || | ||||| | || || ||||| || Sbjct 20597 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 20656 Query 165444 AGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGC 165503 ||| || ||||| ||||| || || || || || || || || | || |||||||| || Sbjct 20657 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 20716 Query 165504 ATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTAT 165563 |||||||| || |||||| | ||||||||||| || || ||||||||||| ||||| Sbjct 20717 TAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTAT 20776 Query 165564 CTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAA 165623 |||||| |||||| | ||| | || || |||||||||||||| || |||||||| || || Sbjct 20777 CTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAA 20836 Query 165624 CCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCG 165683 ||| ||| | |||||||| || | | || |||||||||||| || | ||||| Sbjct 20837 CCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCG 20896 Query 165684 TGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCT 165743 |||| || |||||||||||||||||||| ||||| ||||| |||||||| || || || Sbjct 20897 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCT 20956 Query 165744 CGCTGCTG 165751 ||||||| Sbjct 20957 AGCTGCTG 20964 >seq1 Length=29327 Score = 560 bits (620), Expect = 1e-154 Identities = 722/990 (73%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| | ||| Sbjct 5475 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5534 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| ||||| | || Sbjct 5535 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 5594 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || ||| |||| || || || ||||||| | || |||||||||||||| || || Sbjct 5595 AGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATA 5652 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | |||||| || | | || ||||||||||| || ||||| ||||| | | Sbjct 5653 GTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 5712 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | ||||||||||| || || ||||||| ||||| | Sbjct 5713 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAATAG 5772 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||||||| | || || ||||| | ||||| ||| | | | || || || |||||| Sbjct 5773 GTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 5831 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || ||||| || |||||||| || ||| ||| || || || || || || || Sbjct 5832 ATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGG 5891 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 || || ||||||| || || || ||| || || |||| || || ||||| |||| Sbjct 5892 CAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCTC 5951 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || |||||||||| || || ||||| ||||||||||||||||||||||| || || ||| Sbjct 5952 TTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGT 6011 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | ||| ||||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 6012 GTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 6071 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 |||||||||| |||||||| || || || || | ||||||| |||||||||| Sbjct 6072 GAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACC 6131 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 ||||| ||||| || || ||||||| |||||| || ||||| || |||| ||| ||| Sbjct 6132 TATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 6191 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 6192 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 6251 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | | ||| | || || ||||| ||||| || ||||| ||||| || ||| | Sbjct 6252 CTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATT 6311 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| ||||| || ||||| ||||| || ||||| || || || Sbjct 6312 CGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAA 6371 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 ||||| || |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 6372 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6431 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 6432 GAGGTTCTACCACGTGGAAACGCTCTTTAA 6461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563621886267520