Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq2 688 0.0
seq1 560 1e-154
>seq2
Length=21306
Score = 688 bits (762), Expect = 0.0
Identities = 735/968 (76%), Gaps = 2/968 (0%)
Strand=Plus/Plus
Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844
||| | ||||||||||| |||| ||||| |||||| | |||||||| || | ||
Sbjct 19998 ACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 20057
Query 164845 GCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903
|| || | ||| ||||||| ||| ||||| || ||||| || || || |||||||||||
Sbjct 20058 GCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTAT 20116
Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963
|||||||||||| | || |||||| | ||||| ||||| || ||||| ||||| | |
Sbjct 20117 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 20176
Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023
||| ||||| || ||||| | ||||| ||||| ||||||||||| ||| || | ||
Sbjct 20177 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGA 20236
Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGT 165083
||||||||| ||||| ||||||||||| | | |||| | |||||| | | |||||
Sbjct 20237 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 20296
Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143
|||||| |||||||||||||||||||| || || ||| || |||||||| ||||||||
Sbjct 20297 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 20356
Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203
| || |||||| || ||||| || |||||| |||| |||||| || |||| || |
Sbjct 20357 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 20416
Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 165263
|||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| ||
Sbjct 20417 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 20476
Query 165264 GTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGC 165323
| | || ||||| || || || ||||| ||||||||||| || |||||| | ||||| ||
Sbjct 20477 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGC 20536
Query 165324 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACT 165383
||| |||||||| || || || ||| |||||||||||| | || ||||| |
Sbjct 20537 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 20596
Query 165384 CGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGA 165443
|| | || || || |||| || | || | ||||| | || || ||||| ||
Sbjct 20597 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 20656
Query 165444 AGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGC 165503
||| || ||||| ||||| || || || || || || || || | || |||||||| ||
Sbjct 20657 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 20716
Query 165504 ATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTAT 165563
|||||||| || |||||| | ||||||||||| || || ||||||||||| |||||
Sbjct 20717 TAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTAT 20776
Query 165564 CTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAA 165623
|||||| |||||| | ||| | || || |||||||||||||| || |||||||| || ||
Sbjct 20777 CTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAA 20836
Query 165624 CCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCG 165683
||| ||| | |||||||| || | | || |||||||||||| || | |||||
Sbjct 20837 CCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCG 20896
Query 165684 TGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCT 165743
|||| || |||||||||||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 20897 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCT 20956
Query 165744 CGCTGCTG 165751
|||||||
Sbjct 20957 AGCTGCTG 20964
>seq1
Length=29327
Score = 560 bits (620), Expect = 1e-154
Identities = 722/990 (73%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| |||||||||||||| |||||||| || || | || |||| ||| ||| | |||
Sbjct 5475 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5534
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || |||||||| ||||| | ||
Sbjct 5535 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 5594
Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368
|| ||| |||| || || || ||||||| | || |||||||||||||| || ||
Sbjct 5595 AGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATA 5652
Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428
| | | |||||| || | | || ||||||||||| || ||||| ||||| | |
Sbjct 5653 GTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 5712
Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488
|||| ||| | || || || ||| | ||||||||||| || || ||||||| ||||| |
Sbjct 5713 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAATAG 5772
Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547
|||||||| | || || ||||| | ||||| ||| | | | || || || ||||||
Sbjct 5773 GTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 5831
Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607
||||| || ||||| || |||||||| || ||| ||| || || || || || || ||
Sbjct 5832 ATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGG 5891
Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667
|| || ||||||| || || || ||| || || |||| || || ||||| ||||
Sbjct 5892 CAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCTC 5951
Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727
|| |||||||||| || || ||||| ||||||||||||||||||||||| || || |||
Sbjct 5952 TTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGT 6011
Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787
| | || | ||| ||||| | || || ||||||| ||| ||||| || ||| | | |
Sbjct 6012 GTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 6071
Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847
|||||||||| |||||||| || || || || | ||||||| ||||||||||
Sbjct 6072 GAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACC 6131
Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907
||||| ||||| || || ||||||| |||||| || ||||| || |||| ||| |||
Sbjct 6132 TATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 6191
Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967
|| | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| |
Sbjct 6192 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 6251
Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027
| || | | ||| | || || ||||| ||||| || ||||| ||||| || ||| |
Sbjct 6252 CTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATT 6311
Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087
| ||||| || |||||||| ||||| || ||||| ||||| || ||||| || || ||
Sbjct 6312 CGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAA 6371
Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147
||||| || |||||||||| || ||||| |||||||| | | ||||||||||
Sbjct 6372 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6431
Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
|||||||| || | || |||||||| |||
Sbjct 6432 GAGGTTCTACCACGTGGAAACGCTCTTTAA 6461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563621886267520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |