Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2 540 3e-149 >seq2 Length=21306 Score = 540 bits (598), Expect = 3e-149 Identities = 715/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| ||||| || || |||||||| || || ||||| ||||||||||||||||| Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||| | ||| ||||||||||| | || | || | | |||| Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 20849 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || || || || || || || || || || |||||||| || || | | Sbjct 20848 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 20789 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || |||| ||| || | || ||||||||||| |||||||| ||||| || Sbjct 20788 GCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 20729 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 20728 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 20669 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 20668 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 20609 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| | || | ||||| || | || ||||||||| ||||| | || Sbjct 20608 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 20549 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || || || || | ||| || || |||||||||||||| ||||| || ||| Sbjct 20548 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 20489 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| || |||||||| || ||||| || ||||||||||||||||| ||| Sbjct 20488 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20429 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || ||||| |||| ||||||| ||||| ||||| || ||||||||||| |||||| Sbjct 20428 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 20369 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 || || ||| ||||| || | |||||| || | ||||||| ||||| | || ||| Sbjct 20368 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 20309 Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683 | |||| | | ||||| | ||||| | ||||| |||| ||| || || || || Sbjct 20308 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 20249 Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 36743 |||||||| || || | || ||| |||||||| ||||| || ||||| | |||||| || Sbjct 20248 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 20189 Query 36744 TTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 36803 || | || | || || || ||||| || |||||||| || |||| | ||| || Sbjct 20188 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 20129 Query 36804 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||||| |||||||||||||| ||||| || ||||| || |||| || ||||| | ||| Sbjct 20128 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 20069 Query 36864 GCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGG 36923 | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 20068 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGA 20009 Query 36924 CGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 ||||| | ||||| || | ||||| ||| || Sbjct 20008 CGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150444532354142