Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq2 567 2e-157
>seq2
Length=21306
Score = 567 bits (628), Expect = 2e-157
Identities = 726/997 (73%), Gaps = 10/997 (1%)
Strand=Plus/Minus
Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245
||| |||| |||||||| || |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909
Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAG 5302
|||||||| |||||||| | | ||| |||||||| || | | || ||||
Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTA--- 20852
Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362
||||| || || || || || || || || || || || || |||||||| ||| ||
Sbjct 20851 TCAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCT 20792
Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422
| || |||| ||| || | || || ||||||| ||| |||||||| ||||| |||
Sbjct 20791 AAAGCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGC 20732
Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482
||||| || |||||||| |||||||| | || ||||| || |||||||| || ||
Sbjct 20731 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 20672
Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542
|| ||||| |||||||||||||| |||||| | || || | || ||| | |
Sbjct 20671 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 20612
Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602
|| ||||| | || | |||||| || | |||||||||||| ||| | |
Sbjct 20611 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAA 20552
Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662
|| |||||||| ||||| || || | |||||| || |||||||||||||| ||||| ||
Sbjct 20551 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 20492
Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722
||||||||||| | ||| ||||| ||||||||||| || || |||||||||||||||
Sbjct 20491 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 20432
Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCT 5782
|||||||| || || | ||||| | || || || | | || || ||||| || |||
Sbjct 20431 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCT 20372
Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842
|||||||| || |||||| |||||||| || | | | ||||||| ||||| | ||
Sbjct 20371 GAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGA 20312
Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902
|||| |||| || | ||||| | |||||| | || | |||| || || || |||
Sbjct 20311 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 20252
Query 5903 TTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960
||||| | ||||||||| | ||| ||||||||||| || ||||| ||||| || || |
Sbjct 20251 TTGTATAACCATTCATCAACGGAT--GCTGCTTCCCAAATTGGATAAAAGTGCAAACCGA 20194
Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020
| || || | || | || ||| ||||| || || |||||||| || ||||||||||
Sbjct 20193 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 20134
Query 6021 CTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATA 6080
| | || |||||||| || || || || || ||||| || || || | ||| || | |
Sbjct 20133 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAA 20074
Query 6081 TAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACAT 6140
|||| ||| ||||||||| || | | || ||||| || ||||||||||| || | |
Sbjct 20073 TAAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 20014
Query 6141 AGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
| || ||||| | ||| ||||| | ||||| ||||||
Sbjct 20013 AAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152639588380578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |