Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2 536 4e-148 >seq2 Length=21306 Score = 536 bits (594), Expect = 4e-148 Identities = 714/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| || ||||||||||| || || ||||| ||||||||||||||||| Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || |||||||| | ||| ||||||||||| | || | || | | |||| Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 20849 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || || || || || || || || || || |||||||| || || | | Sbjct 20848 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 20789 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || | || ||||||||||| |||||||| ||||| ||| Sbjct 20788 GCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 20729 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 20728 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 20669 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 20668 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 20609 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 ||||| | || | ||||| || | || ||||||||| ||||| | || Sbjct 20608 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 20549 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||||||| || || || || | ||| || || |||||||||||||| ||||| || ||| Sbjct 20548 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 20489 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || |||| ||| || |||||||| || ||||| || ||||||||||||||||| ||| Sbjct 20488 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20429 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 || ||||| |||| ||||||| ||||| ||||| || ||||||||||| |||||| Sbjct 20428 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 20369 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 || || ||| ||||| || | ||| || || | ||||||| ||||| | || ||| Sbjct 20368 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 20309 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| | | || | | ||||| | ||||| |||| ||| || ||||| || Sbjct 20308 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 20249 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || ||||| || || | || ||| |||||||| ||||| || ||||| | |||||| || Sbjct 20248 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 20189 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 ||| | || | || || |||||||| || |||||||| || |||| | ||| || Sbjct 20188 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 20129 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 ||||| |||||||||||||| ||||| || ||||| || |||| || ||||| | ||| Sbjct 20128 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 20069 Query 26344 GCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGG 26403 | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 20068 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGA 20009 Query 26404 CGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 ||||| | ||||| || | ||||| ||| || Sbjct 20008 CGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151983631404748