Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2 628 3e-175 >seq2 Length=21306 Score = 628 bits (696), Expect = 3e-175 Identities = 713/955 (75%), Gaps = 6/955 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||| ||||| |||||||||||| ||| | | ||| | || || || | Sbjct 20017 TCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTGTTTATTA 20076 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 |||| |||||||| || |||||||| ||||| |||||||| | ||||||||| | || | Sbjct 20077 TTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 20136 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | || || || || ||||| || ||||| ||||| | |||||| ||| ||||| | Sbjct 20137 CTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCG 20196 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | ||||| ||||| || |||||||||||| | ||||||| ||||| || ||||||| Sbjct 20197 GTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTG 20256 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | || | |||||| | | || | | ||| |||||| Sbjct 20257 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 20316 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 ||||||| ||| || ||| | |||||||| |||||||| ||||||||| || || | Sbjct 20317 AGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 20376 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | || || |||||| |||||| |||| || | |||||||| ||| |||| Sbjct 20377 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 20436 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||| Sbjct 20437 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 20496 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||||| ||||| || || || ||| | || || || ||||||||||| ||||| | Sbjct 20497 ACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCC 20556 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||| ||||| | || |||||| | | ||||| ||||| || || Sbjct 20557 TATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 20616 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || || || | ||||| | ||||| ||||| ||||| ||||| || || || | Sbjct 20617 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 20676 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 | |||||||| || ||||| || ||||||||||| ||||| |||||||||||| |||| Sbjct 20677 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTT 20736 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||||| ||||| | ||||| || | |||||||| ||||| | ||| Sbjct 20737 CGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTA 20796 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | ||||||||||||||||| || |||||||| || |||||||| || ||||| | Sbjct 20797 TCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCC 20856 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 ||| || || ||| ||||||||| ||||| | ||| | || |||||||||| Sbjct 20857 AAGGCCGT---GTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGG 20913 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||||||| || ||||||||||| |||||||| || || || ||||||| ||| Sbjct 20914 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553046616408120