Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2 558 1e-154 >seq2 Length=21306 Score = 558 bits (618), Expect = 1e-154 Identities = 721/989 (73%), Gaps = 10/989 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 20960 AGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 20901 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 20900 AGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTACA-- 20843 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||| || ||||| ||||| || || || |||||||| ||| || | || || Sbjct 20842 -GATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAGT 20784 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGT 18069 || ||| || | || ||||||||||| | |||||| |||| || || | |||| Sbjct 20783 AAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACGCGAGTTGT 20725 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || |||||||| |||||||| | || ||||| || |||||||| || || ||||||| Sbjct 20724 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 20665 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||| ||||| || ||| | || || | || ||| ||| || || |||| Sbjct 20664 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 20605 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | || || | ||||| || | || ||||||||| ||||| | || |||| Sbjct 20604 CCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 20545 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || || || || | ||| || || |||||||||||||| ||||| || || |||| Sbjct 20544 ATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGA 20485 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| | |||||| ||||||||||| ||| || ||||||||||||||||| ||||| | Sbjct 20484 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 20425 Query 18370 CTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 |||| |||| || || | | ||||| || | | |||||||| || || || ||||| Sbjct 20424 CTTGACCAATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAATAT 20366 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || |||||||| || | ||||||| ||||| | || |||||| Sbjct 20365 GCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATG 20306 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| |||| ||| || || || || ||| Sbjct 20305 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTAT 20246 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || ||| |||||||| ||||| || ||||| | |||||| || | Sbjct 20245 AACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCTGCA 20186 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || ||||| || || |||||||| || |||| | ||| || ||| Sbjct 20185 GAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACA 20126 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || |||||||| |||| || ||||| | ||| | Sbjct 20125 GGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACACA 20066 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 20065 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG 20006 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | ||||| || | ||||| ||| || Sbjct 20005 TTTTCGGTACTAGTTATCCAGTTACAGAA 19977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151308475688162