Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq2 571 7e-158
seq1 560 1e-154
>seq2
Length=21306
Score = 571 bits (632), Expect = 7e-158
Identities = 704/965 (73%), Gaps = 8/965 (1%)
Strand=Plus/Minus
Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229
||||||| || || || |||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct 20964 CAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 20905
Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289
| ||| ||||||| || || ||||| || || | ||||| || || | ||||| |
Sbjct 20904 GGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCAACTA 20845
Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349
|| ||||| || ||||| || || |||||||| ||||| || || | ||| | || |
Sbjct 20844 CAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAAGCAG 20785
Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409
| ||||||||||||||||| || | |||||||
Sbjct 20784 TAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAGTTGT 20725
Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469
|||| || |||||||||||||| || || || |||||||||||||||||||| || |
Sbjct 20724 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 20665
Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529
| || ||||||||||| ||||| ||||||| | || ||||||| |||| || || |
Sbjct 20664 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 20605
Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588
| | || | | | || | || |||| ||||| |||||||||||||| || ||||| |||
Sbjct 20604 CCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCCG 20546
Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648
|| || ||||| ||||| | |||||| || || ||||| || ||||| || || || |||
Sbjct 20545 AATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGG 20486
Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708
|| || | |||| ||||||| || || ||||| || | ||||||| |||| || ||
Sbjct 20485 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTT 20426
Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768
|||||||||| ||||||| |||||| || |||| ||||| ||||||||||| || |||
Sbjct 20425 CCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATAT 20366
Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828
|| ||| ||||| || ||||| ||||||||| | | ||||||||||| |||||
Sbjct 20365 GCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATG 20306
Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888
|| | | |||| | |||||| | || | |||| |||||||||| || ||
Sbjct 20305 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTAT 20246
Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948
| ||| ||||||| ||||||||||||||||| ||||| ||||| | ||| || || ||
Sbjct 20245 AACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGC--TG 20188
Query 103949 GAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006
|| || |||| || ||||| ||||| || ||||| ||||| | || || |||| |
Sbjct 20187 CAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAA 20128
Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065
| ||||||||||| || || ||||| || ||||| || || | ||| |||| || ||
Sbjct 20127 CAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAACA 20068
Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125
|||| ||||| | ||| | || |||||||||| ||||| ||||| || | || |||
Sbjct 20067 CAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGA 20009
Query 104126 CGGTT 104130
|||||
Sbjct 20008 CGGTT 20004
>seq1
Length=29327
Score = 560 bits (620), Expect = 1e-154
Identities = 732/1013 (72%), Gaps = 0/1013 (0%)
Strand=Plus/Minus
Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769
|||||||| || | ||| | ||||| ||||| |||| || ||||||||| || |||||
Sbjct 6457 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6398
Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829
| |||| ||| || || | |||||| || ||||| || || || |||||||| |||
Sbjct 6397 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAGTC 6338
Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889
|| || || |||||||| ||||| | || || || || || ||||| || ||||| |||
Sbjct 6337 TCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCACGTAGG 6278
Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949
|| || || | ||| | | || | | ||| |||| | ||| | || || |||||
Sbjct 6277 TTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 6218
Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009
| |||||||||||| ||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 6217 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 6158
Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069
|| ||||| || || ||||| ||||| || |||||| |||| || | | || ||
Sbjct 6157 AAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAGCACGA 6098
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|| || ||||| ||||||||||||| | | ||| || || ||||| |||| || ||
Sbjct 6097 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 6038
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | |||| || | |||| | ||| ||||| ||||||||||| |||||||| |||
Sbjct 6037 GCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGC 5978
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | ||||| | |||||||||||| ||||| ||||||||
Sbjct 5977 GTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACACCAAAA 5918
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|| ||||||||||||| ||||| || || ||||| || || || ||| ||||||
Sbjct 5917 CTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAACAAAA 5858
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||| || || |||||||| || || ||||| || || || | | || | | |||
Sbjct 5857 ACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 5798
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| ||| |||||||| | ||||||||| || || |||| || || || ||||| ||||||
Sbjct 5797 AGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCAACAAAA 5738
Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489
| ||| || || || | ||| ||| | ||||||||||| ||||||||||||||
Sbjct 5737 GTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 5678
Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549
|||| | | |||||| | | | | |||||| || || || || ||||| | ||||
Sbjct 5677 AGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTTAAGAAA 5618
Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609
||| ||||| | || | || | ||| ||||||||||| ||||| |||| ||
Sbjct 5617 TTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACAAAGGTT 5558
Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669
|| || || | ||| ||||| | |||| ||| ||| ||||| || | ||| || |||
Sbjct 5557 GTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCGGAC 5498
Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722
||||| ||||| || || || || | | ||||||||||| || |||||
Sbjct 5497 CAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633469863804840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |