Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 540 1e-148 seq1 403 2e-107 >seq2 Length=21306 Score = 540 bits (598), Expect = 1e-148 Identities = 721/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| ||||| ||||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCG---TTAGC- 124155 || | ||| || | ||| | || |||| |||| || | | || || || || Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT----ATTAATTACACGGCCTTGGCT 20853 Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || ||||||||||| ||||||||||| | |||||||||||| || | |||||| Sbjct 20852 ATCAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACC 20793 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | || || ||||| || | |||||||||||||| | | Sbjct 20792 TAAAGCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 20733 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 ||||||||||| |||||| |||||||| | || ||||| ||||| || || ||||| Sbjct 20732 CGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 20673 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 || || || |||||||| ||||| ||||| | ||||| | || || || | || Sbjct 20672 GATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 20613 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 ||| ||||| ||||| | | ||| || || | ||||||||||| || ||||| || Sbjct 20612 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGA 20553 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || ||||| | || ||||| ||| |||||| || |||||||| || ||||| ||||| Sbjct 20552 ACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTC 20493 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 || ||||| || | ||| |||||||||||||| || || || || |||||||||||||| Sbjct 20492 AGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 20433 Query 124576 GAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGC 124635 || || ||||||| |||||| | ||||| |||||| ||||| | || || || Sbjct 20432 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGC 20373 Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCT 124695 |||||| |||||| |||||||| ||||| || | | | | || ||||||| | Sbjct 20372 TGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACG 20313 Query 124696 TCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||||||| | | ||||| | |||||| | || | | | |||||||||||| Sbjct 20312 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 20253 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 ||| || |||||||||||||| | |||||||||||| ||||| || ||||| | ||||| Sbjct 20252 ATTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGAT 20193 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 ||| || | |||| || ||||| ||||| || ||||| || || | | ||| || Sbjct 20192 AGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCC 20133 Query 124876 CGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGAT 124935 | || ||||| | || || || ||||| || ||||| || ||||| || |||| || Sbjct 20132 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAAT 20073 Query 124936 GAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACAT 124994 || ||| | | ||| || | |||| || ||||| | |||||||||||| || | | Sbjct 20072 AAACACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 20014 Query 124995 AAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||| | || |||| ||| | |||||| Sbjct 20013 AAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977 >seq1 Length=29327 Score = 403 bits (446), Expect = 2e-107 Identities = 713/1038 (69%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 6461 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 6402 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 6401 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAA 6342 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || ||||| || |||||||| || | Sbjct 6341 AGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCACG 6282 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || | ||| || | || | || |||| | ||| | || || || Sbjct 6281 TAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 6222 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 6221 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 6162 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | |||||| || | ||| ||| |||||||| | || || || | || || Sbjct 6161 CCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAGC 6102 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | |||| |||| ||| | || ||| || ||||| | || || Sbjct 6101 AC-GAAA--TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 6063 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| || || | || | || || ||||| Sbjct 6062 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAAC 6003 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| || || || || ||||| | || | ||| | Sbjct 6002 TCCCATCATATGAAATGGGTTCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAA 5943 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 | ||| || ||||| ||||| || ||||| |||||||||| ||| |||||||| Sbjct 5942 TCTAAATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGG 5883 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || |||||||||||| ||| || || Sbjct 5882 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATA 5823 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | ||||||||| | | |||||||||||| ||||| Sbjct 5822 AGGTCGCAATTGAACAGATCGAGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCC 5763 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 5762 AAAAGCGCCATGCAGAGCAACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAA 5703 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 5702 ATCTCCTTGTGCTTCAGGACCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGG 5643 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| ||||||||||| || || || | ||| ||| || | ||||| Sbjct 5642 AGTAGAAACTGCGGCTGTTAAGAAATTACAGCCTTCCAAATAGGAACTGGCCAACCCATG 5583 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 5582 GGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGC 5523 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||| ||||| |||| || || ||||| || ||| |||||| Sbjct 5522 ACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCA 5463 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 5462 GTCATCCATAATATCAAA 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578958427397960