Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2 547 8e-151 >seq2 Length=21306 Score = 547 bits (606), Expect = 8e-151 Identities = 718/988 (73%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| |||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| ||| ||| | || | || Sbjct 20908 CCAAGGTTAGCACGGTTGATAATA--TCAGCCCAAGTATTAATTACACGGCCTTGGCTAT 20851 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || ||||||||||| || || || || ||||| |||||||| || | ||||| | Sbjct 20850 CAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTA 20791 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA--GACTTCT 8117 || ||| ||||| | || || || || | | ||| ||||||||||| | || | Sbjct 20790 AAGCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCG 20731 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || | Sbjct 20730 A--GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 20674 Query 8177 CAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTT 8236 | |||||||| || ||||| |||||||| || | ||||| | || ||| || | || Sbjct 20673 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTT 20614 Query 8237 CAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTG 8296 | || || || ||||| | | ||| || || || ||||| |||||||||||||| || | Sbjct 20613 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGG 20554 Query 8297 ATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCT 8356 | || ||||| | ||| ||||| ||| ||| || || ||||||||||| ||||| |||| Sbjct 20553 AACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCT 20494 Query 8357 CTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAG 8416 | || |||||||| | ||||||||| || ||||||||||| ||||||||||| ||||||| Sbjct 20493 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAG 20434 Query 8417 AGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAG 8476 | || || ||||||| ||| || | ||||| || ||| |||||| | || |||| Sbjct 20433 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAG 20374 Query 8477 CACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTC 8536 | |||||| ||| ||||| |||| |||||| | ||| | | |||||||| | Sbjct 20373 CTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCAC 20314 Query 8537 TACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596 |||||||||| || | |||| | |||||| | | || | | ||| ||||| | Sbjct 20313 GACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 20254 Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656 | || || ||||| ||||| | | || ||||||||||| ||||| ||||| || || | Sbjct 20253 CATTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGA 20194 Query 8657 TAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAAC 8716 |||| |||| |||| | ||||| ||||| || |||||||| || | | || | Sbjct 20193 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 20134 Query 8717 CTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGA 8776 | | |||||||||||||||||| || ||||| || || ||||| ||||| || || | | Sbjct 20133 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAA 20074 Query 8777 TAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACAT 8836 |||| || || || | || ||| ||| ||||| | ||| |||||||| |||| | Sbjct 20073 TAAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 20014 Query 8837 AAAGTCTGTTGTTTGTACTTGTAACCCA 8864 |||| | ||| | ||||| || | ||| Sbjct 20013 AAAGACGGTTTTCGGTACTAGTTATCCA 19986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615819882399560