Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq2 547 8e-151
>seq2
Length=21306
Score = 547 bits (606), Expect = 8e-151
Identities = 718/988 (73%), Gaps = 10/988 (1%)
Strand=Plus/Minus
Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941
||| ||| |||| |||| |||||||| || ||||| | |||||||||||||||||||
Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909
Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999
|| | ||| || | ||| ||||| ||| |||| ||| ||| | || | ||
Sbjct 20908 CCAAGGTTAGCACGGTTGATAATA--TCAGCCCAAGTATTAATTACACGGCCTTGGCTAT 20851
Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059
|||| || ||||||||||| || || || || ||||| |||||||| || | ||||| |
Sbjct 20850 CAACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTA 20791
Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA--GACTTCT 8117
|| ||| ||||| | || || || || | | ||| ||||||||||| | || |
Sbjct 20790 AAGCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCG 20731
Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176
| |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || |
Sbjct 20730 A--GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 20674
Query 8177 CAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTT 8236
| |||||||| || ||||| |||||||| || | ||||| | || ||| || | ||
Sbjct 20673 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTT 20614
Query 8237 CAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTG 8296
| || || || ||||| | | ||| || || || ||||| |||||||||||||| || |
Sbjct 20613 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGG 20554
Query 8297 ATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCT 8356
| || ||||| | ||| ||||| ||| ||| || || ||||||||||| ||||| ||||
Sbjct 20553 AACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCT 20494
Query 8357 CTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAG 8416
| || |||||||| | ||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 20493 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAG 20434
Query 8417 AGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAG 8476
| || || ||||||| ||| || | ||||| || ||| |||||| | || ||||
Sbjct 20433 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAG 20374
Query 8477 CACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTC 8536
| |||||| ||| ||||| |||| |||||| | ||| | | |||||||| |
Sbjct 20373 CTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCAC 20314
Query 8537 TACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596
|||||||||| || | |||| | |||||| | | || | | ||| ||||| |
Sbjct 20313 GACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 20254
Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656
| || || ||||| ||||| | | || ||||||||||| ||||| ||||| || || |
Sbjct 20253 CATTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGA 20194
Query 8657 TAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAAC 8716
|||| |||| |||| | ||||| ||||| || |||||||| || | | || |
Sbjct 20193 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 20134
Query 8717 CTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGA 8776
| | |||||||||||||||||| || ||||| || || ||||| ||||| || || | |
Sbjct 20133 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAA 20074
Query 8777 TAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACAT 8836
|||| || || || | || ||| ||| ||||| | ||| |||||||| |||| |
Sbjct 20073 TAAACACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGT 20014
Query 8837 AAAGTCTGTTGTTTGTACTTGTAACCCA 8864
|||| | ||| | ||||| || | |||
Sbjct 20013 AAAGACGGTTTTCGGTACTAGTTATCCA 19986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615819882399560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |