Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq2 627 1e-174
seq1 513 2e-140
seq5 98.7 1e-15
seq43 93.3 5e-14
>seq2
Length=21306
Score = 627 bits (694), Expect = 1e-174
Identities = 737/994 (74%), Gaps = 2/994 (0%)
Strand=Plus/Plus
Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827
|||||| | ||| | || || || | |||||||| || |||| ||||||||| |
Sbjct 19976 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 20035
Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886
|||||| || || | ||| | |||||| |||| || || | |||||||| || ||||
Sbjct 20036 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094
Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946
| || || || || || || || |||||||| || |||| ||||| | || || ||||
Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154
Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006
| || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| |
Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214
Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066
| |||||||| ||||| |||| |||||| | || || |||||||||| |||| |||
Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274
Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126
| | |||||| | |||| | | |||||||||||||||||||| || || ||
Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334
Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186
|||| |||||||| || ||||| |||||| || ||||| || || || ||||| | |
Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394
Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246
| || ||| | | || || | |||||||| ||||| ||||||| ||||| || ||||
Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454
Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306
| || || || ||||||| |||| | || ||||| ||||||||||| || || |||||||
Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514
Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366
| || || ||| | ||||| ||||| ||||| || || | || ||||||||||| |
Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574
Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426
| ||||| |||||| | | | || || || || |||| ||||| || | |
Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634
Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486
|||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || |
Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694
Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546
| || |||||||||||||| ||| ||||||||||| || || || ||||||||||| |
Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754
Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606
|||| |||||||| || || |||||||| || || | || || || ||||||||||
Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814
Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666
|||| || |||||||| || ||||| || | ||||| | || || ||||| | || |
Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874
Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726
| ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| |
Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934
Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760
| || |||||||| || || || ||||||| |||
Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 513 bits (568), Expect = 2e-140
Identities = 731/1022 (72%), Gaps = 10/1022 (1%)
Strand=Plus/Plus
Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073
|||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| ||
Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504
Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133
|| | || ||||| ||| ||| | ||| | || |||||| | || || || || ||
Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564
Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGGTGCGAACTTT 167190
|| || |||||||| ||||| | || ||||| || | || || || |||
Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGC---CAGTTCCTATTTGGAAGGCTGTAA-TTT 5620
Query 167191 CTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249
|||| | || |||||| |||||| || || | | | ||||||||| | | |||||
Sbjct 5621 CTTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATG 5680
Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309
|||||||||| | ||||| ||||| | ||| ||| | || || || ||| ||||
Sbjct 5681 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 5740
Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369
||| || || || || || |||| || || ||||||||| | || || ||||| |||||
Sbjct 5741 TGTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGC 5800
Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428
||| ||| | | | || || || ||||| || || |||||||| || |||||||| |
Sbjct 5801 TCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 5859
Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488
| ||| || ||||| | ||||| || || || | ||||||||||| || |
Sbjct 5860 TTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTT 5919
Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548
| || || || || || || ||||| ||||||| | |||||||| || || ||||| |
Sbjct 5920 TTGGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGC 5979
Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608
|||| ||||||||||||||||| || || ||| | |||| | ||| ||||| | || |
Sbjct 5980 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTA 6039
Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668
| ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || |||
Sbjct 6040 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTC 6099
Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728
|| || | | ||||| | ||||| || ||||| ||||| || || ||||| || |
Sbjct 6100 GTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTT 6159
Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTAT 167788
|||| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||
Sbjct 6160 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 6219
Query 167789 TCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATC 167848
| || || || | || | |||| | |||| | | ||| |||| || || |
Sbjct 6220 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACC 6279
Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908
| ||||| ||||| ||||||||||| || || | || ||||| ||||| || ||||| |
Sbjct 6280 TACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGA 6339
Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968
||||||| || ||||| || || | || |||||| |||| || ||| | || || |
Sbjct 6340 CTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAG 6399
Query 167969 ATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTAT 168028
|||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || |
Sbjct 6400 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 6459
Query 168029 AA 168030
||
Sbjct 6460 AA 6461
>seq5
Length=9041
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||||
Sbjct 1404 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTA 1463
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 1464 GGTTCGAATCCTACTTGGGGAG 1485
>seq43
Length=3920
Score = 93.3 bits (102), Expect = 5e-14
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179
||| ||| |||||||||||||||| || ||||| ||| ||||||| || |||||||||
Sbjct 1603 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 1661
Query 18180 GTTCAAATCCTACCTGGGGAG 18200
||||||||||||| |||||||
Sbjct 1662 GTTCAAATCCTACTTGGGGAG 1682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561209252841200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |