Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2 627 1e-174 seq1 513 2e-140 seq5 98.7 1e-15 seq43 93.3 5e-14 >seq2 Length=21306 Score = 627 bits (694), Expect = 1e-174 Identities = 737/994 (74%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || || || | |||||||| || |||| ||||||||| | Sbjct 19976 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 20035 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| |||| || || | |||||||| || |||| Sbjct 20036 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || |||||||| || |||| ||||| | || || |||| Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| | Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || |||||||||| |||| ||| Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | |||||||||||||||||||| || || || Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| |||||||| || ||||| |||||| || ||||| || || || ||||| | | Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || | |||||||| ||||| ||||||| ||||| || |||| Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | || || || ||||||| |||| | || ||||| ||||||||||| || || ||||||| Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | ||||| ||||| ||||| || || | || ||||||||||| | Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| ||||||||||| || || || ||||||||||| | Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || |||||||| || || | || || || |||||||||| Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 |||| || |||||||| || ||||| || | ||||| | || || ||||| | || | Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 | ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| | Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 | || |||||||| || || || ||||||| ||| Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 513 bits (568), Expect = 2e-140 Identities = 731/1022 (72%), Gaps = 10/1022 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| || Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGGTGCGAACTTT 167190 || || |||||||| ||||| | || ||||| || | || || || ||| Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGC---CAGTTCCTATTTGGAAGGCTGTAA-TTT 5620 Query 167191 CTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 |||| | || |||||| |||||| || || | | | ||||||||| | | ||||| Sbjct 5621 CTTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATG 5680 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||||||| | ||||| ||||| | ||| ||| | || || || ||| |||| Sbjct 5681 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 5740 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || || || || || |||| || || ||||||||| | || || ||||| ||||| Sbjct 5741 TGTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGC 5800 Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428 ||| ||| | | | || || || ||||| || || |||||||| || |||||||| | Sbjct 5801 TCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 5859 Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488 | ||| || ||||| | ||||| || || || | ||||||||||| || | Sbjct 5860 TTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTT 5919 Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548 | || || || || || || ||||| ||||||| | |||||||| || || ||||| | Sbjct 5920 TTGGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGC 5979 Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608 |||| ||||||||||||||||| || || ||| | |||| | ||| ||||| | || | Sbjct 5980 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTA 6039 Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668 | ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || ||| Sbjct 6040 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTC 6099 Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728 || || | | ||||| | ||||| || ||||| ||||| || || ||||| || | Sbjct 6100 GTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTT 6159 Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTAT 167788 |||| || ||||| || ||||||| ||| ||||| ||| | |||||||||||||||| Sbjct 6160 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 6219 Query 167789 TCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATC 167848 | || || || | || | |||| | |||| | | ||| |||| || || | Sbjct 6220 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACC 6279 Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908 | ||||| ||||| ||||||||||| || || | || ||||| ||||| || ||||| | Sbjct 6280 TACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGA 6339 Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968 ||||||| || ||||| || || | || |||||| |||| || ||| | || || | Sbjct 6340 CTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAG 6399 Query 167969 ATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTAT 168028 |||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || | Sbjct 6400 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 6459 Query 168029 AA 168030 || Sbjct 6460 AA 6461 >seq5 Length=9041 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||| Sbjct 1404 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTA 1463 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 1464 GGTTCGAATCCTACTTGGGGAG 1485 >seq43 Length=3920 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct 1603 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 1661 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 ||||||||||||| ||||||| Sbjct 1662 GTTCAAATCCTACTTGGGGAG 1682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561209252841200