Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2 511 1e-140 >seq2 Length=21306 Score = 511 bits (566), Expect = 1e-140 Identities = 689/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | |||| ||| | ||| ||| |||| || Sbjct 20004 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 20062 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| ||||| ||| ||| || || || || || ||||| || || || Sbjct 20063 TTCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGA 20122 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | || || ||||| || || ||||| ||| | |||| | Sbjct 20123 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 20182 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || ||||| | ||||| || |||||||||||||| || | |||||||||| Sbjct 20183 TTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATG 20242 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| || ||||| | |||| | || | |||||| | |||| || | Sbjct 20243 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 20302 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||| ||||| | || || || ||| | || ||||| ||| Sbjct 20303 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 20362 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | | || || |||| || Sbjct 20363 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCA 20422 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 20423 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 20482 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || ||||||||||| ||||||||| | || || || || || Sbjct 20483 ATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGT 20542 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 20543 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 20602 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| || |||||||||||||| || Sbjct 20603 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 20662 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 20663 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 20722 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || || || ||| | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 20723 CAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 20782 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 | |||| | || | ||| ||||| |||||| | ||||||||||| ||||||||||| Sbjct 20783 TACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATC 20842 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| ||| | |||||||| || Sbjct 20843 TGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTAA 20902 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 |||||| | || || |||||||| || || || || |||||||| || || || || Sbjct 20903 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGC 20959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204810437192