Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq2 706 0.0
seq1 538 4e-148
seq5 96.9 4e-15
seq43 89.7 6e-13
>seq2
Length=21306
Score = 706 bits (782), Expect = 0.0
Identities = 756/994 (76%), Gaps = 4/994 (0%)
Strand=Plus/Minus
Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893
||| ||||||| || || ||||||||||| || || ||||| ||||||||||||||||||
Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909
Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953
|| | ||| ||||||| || || ||||| ||| | || || ||||||
Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 20849
Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013
| | ||| ||||| || ||||||||||| |||||||||||||| || || | ||| |
Sbjct 20848 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 20789
Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073
||||| ||||||||||| || |||||||| ||||| ||||||||||| | |||||| |||
Sbjct 20788 GCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 20729
Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133
|||||||| ||||| |||||||||| || || || || ||||| || || || ||
Sbjct 20728 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 20669
Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193
|| ||||| ||||| ||||||||||| ||||||| | || || ||| |||| |||
Sbjct 20668 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 20609
Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253
||||| | | || |||||| |||| |||||||||||| |||||||| || || ||
Sbjct 20608 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 20549
Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313
|| ||||| ||||| ||||| | ||| || || || ||||| |||||||||||||| ||
Sbjct 20548 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 20489
Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373
||||| || | |||| ||||||||||||||||||| || |||||||| | ||||| ||
Sbjct 20488 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20429
Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433
|||||||| | || |||| || ||| || |||| || ||||||||||| || ||
Sbjct 20428 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 20369
Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493
||||||||| |||||||| |||||||| ||||| | ||| ||||| ||||| |||
Sbjct 20368 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 20309
Query 68494 ATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTG 68553
||||| | | ||||| | |||||| | | | |||| ||||||||||||||
Sbjct 20308 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 20249
Query 68554 TACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCA 68613
|| ||||| ||||||| || ||||||||||||||| ||||||||||| | ||| || ||
Sbjct 20248 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 20189
Query 68614 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCA 68673
||| |||||| || ||||| || || || ||||| || || || || || |||| |
Sbjct 20188 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 20129
Query 68674 ACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA- 68732
|||||||||||||||||||| || || || || ||||| || |||||||| | || ||
Sbjct 20128 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 20069
Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791
||||| ||||| | ||| || ||||||||||||| || || ||||| || | |||||
Sbjct 20068 ACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 20011
Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825
| ||||| || || ||| | ||| | |||||
Sbjct 20010 GACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977
>seq1
Length=29327
Score = 538 bits (596), Expect = 4e-148
Identities = 725/1007 (72%), Gaps = 2/1007 (0%)
Strand=Plus/Minus
Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645
||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || |
Sbjct 6462 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 6403
Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705
|||| || |||| ||| || |||| |||||| || |||||||| || || |||||||
Sbjct 6402 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 6343
Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765
| ||||| || || || ||||| ||||| | || || || || || ||||| || ||||
Sbjct 6342 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCAC 6283
Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825
| ||||| || || | ||| | | || | | ||| |||| | ||| | || || |
Sbjct 6282 GTAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 6223
Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885
|||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || |
Sbjct 6222 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 6163
Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945
|||| |||||||| ||||| ||||| || || ||||||||| ||||||| | || || |
Sbjct 6162 ACCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAG 6103
Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005
| || || ||||| |||||||||||| | | |||||| ||||| ||| ||||||
Sbjct 6102 CACGAAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 6043
Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065
|||| || | ||||| ||| | |||| | ||| || || |||||||||||||| ||||
Sbjct 6042 GAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 5983
Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125
||| ||||| ||||| |||||||| | ||||| | ||||| ||| || |||| || |
Sbjct 5982 TCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACAC 5923
Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185
| ||| || || || ||||||| || || || || || || || || || ||| ||
Sbjct 5922 CAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAA 5863
Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244
|||||||||| || || |||||||| || || ||||| || || || | | || |||
Sbjct 5862 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 5804
Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304
|| || || ||||| || || | ||||||||| ||||| | ||||| || || || ||
Sbjct 5803 CGAGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCA 5744
Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364
|||||| |||| || || || | ||| ||| || ||||| || || | ||||||
Sbjct 5743 ACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 5684
Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424
||||| |||| | | |||||| | | | || |||||| || || || || |||||
Sbjct 5683 CCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTT 5624
Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484
| |||||| || || | ||| | || | || || || ||||| || |||
Sbjct 5623 AAGAAATTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACA 5564
Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544
|| || ||||| || | ||| || || | || | ||| ||| ||||| || | |||
Sbjct 5563 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGA 5504
Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591
|| |||||||| ||||| || || || || | | |||||||||
Sbjct 5503 CCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 5457
>seq5
Length=9041
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||
Sbjct 1493 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGC 1436
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 1435 TCTACCACTGAGCTACTGAGGA 1414
>seq43
Length=3920
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570
||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || |||
Sbjct 1682 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 1623
Query 35571 AGCTACTGAGGA 35582
||||||||||||
Sbjct 1622 AGCTACTGAGGA 1611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572014906794360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |