Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2 706 0.0 seq1 538 4e-148 seq5 96.9 4e-15 seq43 89.7 6e-13 >seq2 Length=21306 Score = 706 bits (782), Expect = 0.0 Identities = 756/994 (76%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| || || ||||||||||| || || ||||| |||||||||||||||||| Sbjct 20968 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 20909 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | ||| ||||||| || || ||||| ||| | || || |||||| Sbjct 20908 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 20849 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | ||| ||||| || ||||||||||| |||||||||||||| || || | ||| | Sbjct 20848 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 20789 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 ||||| ||||||||||| || |||||||| ||||| ||||||||||| | |||||| ||| Sbjct 20788 GCAGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 20729 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 |||||||| ||||| |||||||||| || || || || ||||| || || || || Sbjct 20728 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 20669 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 || ||||| ||||| ||||||||||| ||||||| | || || ||| |||| ||| Sbjct 20668 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 20609 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 ||||| | | || |||||| |||| |||||||||||| |||||||| || || || Sbjct 20608 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 20549 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 || ||||| ||||| ||||| | ||| || || || ||||| |||||||||||||| || Sbjct 20548 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 20489 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 ||||| || | |||| ||||||||||||||||||| || |||||||| | ||||| || Sbjct 20488 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20429 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||| | || |||| || ||| || |||| || ||||||||||| || || Sbjct 20428 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 20369 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 ||||||||| |||||||| |||||||| ||||| | ||| ||||| ||||| ||| Sbjct 20368 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 20309 Query 68494 ATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTG 68553 ||||| | | ||||| | |||||| | | | |||| |||||||||||||| Sbjct 20308 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 20249 Query 68554 TACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCA 68613 || ||||| ||||||| || ||||||||||||||| ||||||||||| | ||| || || Sbjct 20248 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 20189 Query 68614 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCA 68673 ||| |||||| || ||||| || || || ||||| || || || || || |||| | Sbjct 20188 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 20129 Query 68674 ACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA- 68732 |||||||||||||||||||| || || || || ||||| || |||||||| | || || Sbjct 20128 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAATAAAC 20069 Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 ||||| ||||| | ||| || ||||||||||||| || || ||||| || | ||||| Sbjct 20068 ACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 20011 Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | ||||| || || ||| | ||| | ||||| Sbjct 20010 GACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 19977 >seq1 Length=29327 Score = 538 bits (596), Expect = 4e-148 Identities = 725/1007 (72%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 6462 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 6403 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || |||||||| || || ||||||| Sbjct 6402 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 6343 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | || || || || || ||||| || |||| Sbjct 6342 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCAC 6283 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || | ||| | | || | | ||| |||| | ||| | || || | Sbjct 6282 GTAGGTTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 6223 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 6222 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 6163 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| ||||| ||||| || || ||||||||| ||||||| | || || | Sbjct 6162 ACCAAAAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAG 6103 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | || || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 6102 CACGAAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 6043 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | ||||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 6042 GAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 5983 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||| ||||| |||||||| | ||||| | ||||| ||| || |||| || | Sbjct 5982 TCAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACAC 5923 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || || || || || || || || || ||| || Sbjct 5922 CAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAA 5863 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || || |||||||| || || ||||| || || || | | || ||| Sbjct 5862 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 5804 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || || ||||| || || | ||||||||| ||||| | ||||| || || || || Sbjct 5803 CGAGCAAGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCA 5744 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 5743 ACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 5684 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || ||||| Sbjct 5683 CCCCATAGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTT 5624 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | |||||| || || | ||| | || | || || || ||||| || ||| Sbjct 5623 AAGAAATTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACA 5564 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || || ||||| || | ||| || || | || | ||| ||| ||||| || | ||| Sbjct 5563 AAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGA 5504 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || |||||||| ||||| || || || || | | ||||||||| Sbjct 5503 CCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 5457 >seq5 Length=9041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| || Sbjct 1493 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGC 1436 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 1435 TCTACCACTGAGCTACTGAGGA 1414 >seq43 Length=3920 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 1682 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 1623 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 1622 AGCTACTGAGGA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572014906794360