Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2 610 7e-170 seq1 515 4e-141 >seq2 Length=21306 Score = 610 bits (676), Expect = 7e-170 Identities = 735/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || | |||||| | || ||||| Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||| ||||| || | || |||| || || ||| | ||||| ||||| || Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | |||||| | ||||| | | |||||||| ||||||||||| ||| | ||| Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 ||| ||| | |||| || | |||||||| ||| || |||| ||||||||| || || Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455 Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118 ||||||||||| |||| |||| |||||||||| || || ||||||||||||||||| || Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515 Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575 Query 158179 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | || |||| || | | || | ||||| || |||| || || || | | Sbjct 20576 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 |||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || | Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 | || |||||||||||||| ||| ||||||||||| ||||| || ||||||||||| | Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| |||||||| || || |||||||| || || | || || || |||||||||| Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 |||| || |||||||| || ||||| || | ||||| | || || ||||| | || | Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934 Query 158538 CACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 | || |||||||| || || || ||||||| ||| Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 515 bits (570), Expect = 4e-141 Identities = 720/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || |||||||| || ||||| || ||| | || || Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | || ||||||||| | || || ||| || | ||||| || || Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAGTT 5636 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 5637 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAA 5696 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || | |||| |||||| || || || || Sbjct 5697 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGC 5756 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664 || || | ||||| ||||||||| | ||||| ||||| || || || ||| | | | Sbjct 5757 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-T 5815 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| || || |||||||| || |||||||||||||| || ||||| Sbjct 5816 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 5875 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| | || ||||| ||||||| || || || ||||| || ||||| || Sbjct 5876 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 5935 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||||||||| | | || ||||||||||||| || |||||| | || || || ||||| Sbjct 5936 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 5995 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 |||||||||||| ||| || | || | || | || | || || ||||| | |||||| Sbjct 5996 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 6055 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||| || || | | ||||||||| || |||||||| ||| || ||| | |||| Sbjct 6056 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 6115 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| ||| || || || || ||||||||||| |||||||| ||||| || ||||| || Sbjct 6116 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 6175 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | || Sbjct 6176 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 6235 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| || |||| | | || | || || || || ||||| ||||| || Sbjct 6236 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 6295 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| ||| || || | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 6296 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 6355 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || ||||| |||||||| | || || ||| |||| || ||||| || |||||||| Sbjct 6356 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6415 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 6416 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548336541602360