Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq2 610 7e-170
seq1 515 4e-141
>seq2
Length=21306
Score = 610 bits (676), Expect = 7e-170
Identities = 735/994 (74%), Gaps = 4/994 (0%)
Strand=Plus/Plus
Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639
||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || ||
Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036
Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698
||||| || || | ||| | ||||| ||||| || || | |||||| | || |||||
Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095
Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155
Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818
|| ||||| ||||| || | || |||| || || ||| | ||||| ||||| ||
Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215
Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878
|||||||| ||||| ||||||| ||| | || || |||||||||| |||| | ||
Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275
Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938
| |||||| | ||||| | | |||||||| ||||||||||| ||| | |||
Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335
Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998
| | |||||||| || ||||| ||| |||||||| ||||| || || || || | ||
Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395
Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058
||| ||| | |||| || | |||||||| ||| || |||| ||||||||| || ||
Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455
Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118
||||||||||| |||| |||| |||||||||| || || ||||||||||||||||| ||
Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515
Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178
|| || ||| | || || ||||| |||||||| || || || ||| ||||||||| ||
Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575
Query 158179 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158237
| || |||| || | | || | ||||| || |||| || || || | |
Sbjct 20576 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634
Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297
|||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || |
Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694
Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357
| || |||||||||||||| ||| ||||||||||| ||||| || ||||||||||| |
Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754
Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417
|||| |||||||| || || |||||||| || || | || || || ||||||||||
Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814
Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477
|||| || |||||||| || ||||| || | ||||| | || || ||||| | || |
Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874
Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537
| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934
Query 158538 CACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571
| || |||||||| || || || ||||||| |||
Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 515 bits (570), Expect = 4e-141
Identities = 720/1007 (71%), Gaps = 2/1007 (0%)
Strand=Plus/Plus
Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365
||||||||| | | || || || |||||||| || ||||| || ||| | || ||
Sbjct 5457 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5516
Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 5517 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5576
Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485
|| ||||| || | || ||||||||| | || || ||| || | ||||| || ||
Sbjct 5577 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAGTT 5636
Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545
|| || |||||| | | | | |||||| | | |||| ||||||||||| | ||
Sbjct 5637 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAA 5696
Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605
|| |||| || ||||| ||| | || || | |||| |||||| || || || ||
Sbjct 5697 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGC 5756
Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664
|| || | ||||| ||||||||| | ||||| ||||| || || || ||| | | |
Sbjct 5757 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-T 5815
Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724
|| ||||| ||||| || || |||||||| || |||||||||||||| || |||||
Sbjct 5816 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 5875
Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784
|| || ||| | || ||||| ||||||| || || || ||||| || ||||| ||
Sbjct 5876 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 5935
Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844
||||||||| | | || ||||||||||||| || |||||| | || || || |||||
Sbjct 5936 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 5995
Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904
|||||||||||| ||| || | || | || | || | || || ||||| | ||||||
Sbjct 5996 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 6055
Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964
||| || || | | ||||||||| || |||||||| ||| || ||| | ||||
Sbjct 6056 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 6115
Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024
||||| ||| || || || || ||||||||||| |||||||| ||||| || ||||| ||
Sbjct 6116 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 6175
Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084
|||| ||||| || || || ||| | |||||||| ||||| ||||| || || | ||
Sbjct 6176 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 6235
Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144
| | |||| || |||| | | || | || || || || ||||| ||||| ||
Sbjct 6236 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 6295
Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204
||| ||| || || | ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 6296 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 6355
Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264
|| ||||| |||||||| | || || ||| |||| || ||||| || ||||||||
Sbjct 6356 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6415
Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311
| |||| ||||| || || || | || | || ||||| |||||||
Sbjct 6416 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548336541602360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |