Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2 581 4e-161 seq1 531 6e-146 >seq2 Length=21306 Score = 581 bits (644), Expect = 4e-161 Identities = 730/995 (73%), Gaps = 5/995 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || | |||||| | || ||||| Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||| ||||| || | || |||| || || ||| | ||||| ||||| || Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | || ||||| ||||||||||| ||| | ||| Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || |||| Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | |||| || | |||||||| || || |||| ||||||||| || | Sbjct 20396 TGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| |||| |||||||||| || || ||||| ||||||||||| | Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || |||||| | || | || || ||||||| ||| || || | | Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || |||||||| || || | ||| | || |||||||| | Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| ||||| ||||| || ||||| || | | || | ||||| ||||| | || | Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | |||||||||| || || |||||||| ||||| ||| | ||| Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT- 20933 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGCAGCTGA 178550 || ||||||||||| || ||||| || || | ||| Sbjct 20934 GCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 531 bits (588), Expect = 6e-146 Identities = 724/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| |||||||| || || | || Sbjct 5455 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5514 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 5515 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5574 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||||||| | ||||| ||| ||||||| | || || Sbjct 5575 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCA 5633 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 5634 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCA 5693 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || || |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 5694 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCAT 5753 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || || | ||||| || |||||| | ||||| ||||| || || || ||| || Sbjct 5754 GGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAA 5813 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || |||| || ||||| || || ||| |||||| Sbjct 5814 T-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 5872 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||||| || || || ||||||||||||| || |||||||| || || Sbjct 5873 CCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 5932 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 || ||||||||| | || || || ||||| || || || ||||| || ||||| ||||| Sbjct 5933 TATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCA 5992 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||||||||| ||| | |||| | |||| |||| | ||||||||||| | || Sbjct 5993 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTAC 6052 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 |||||| ||||| || | ||||||||| || ||||| |||||| || || || | Sbjct 6053 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCC 6112 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| ||| || |||||||| ||||| || |||||||| |||||||| || ||||| Sbjct 6113 AACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTT 6172 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 6173 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6232 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 ||| | ||| | | || |||| | | || | || || || || ||||| || || Sbjct 6233 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGA 6292 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 || || ||| || || | ||||| ||||||||||| || ||||| ||||| || || Sbjct 6293 CTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 6352 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 || ||||| | || ||||| | || |||||| |||| || ||||| || ||||| Sbjct 6353 AAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 6412 Query 179907 AAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| | || ||||| || || || ||||| |||| ||||| || Sbjct 6413 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605625386250680