Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq1 632 2e-176
seq2 598 5e-166
>seq1
Length=29327
Score = 632 bits (700), Expect = 2e-176
Identities = 750/1014 (74%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438
|||||| | ||||||||||| | | || || || || ||||| |||||||| ||
Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504
Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498
|| | || |||| ||| ||| | || | || |||||| | || || || || |||
Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564
Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558
| || ||||| ||||| || | || |||||||| | ||||| |||||| |
Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 5624
Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618
|| || || || || || |||||| || | | | |||||| | | |||| ||||||
Sbjct 5625 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 5684
Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678
||||| | ||||| || || || ||||| ||| | || || | ||| | ||||||
Sbjct 5685 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5744
Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737
||||| || || || || | || |||||||| ||| |||| |||||||| |||||||
Sbjct 5745 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 5804
Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797
||| ||| | || ||||| ||||| || || |||||||| || ||||||||||||||
Sbjct 5805 TCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGT 5863
Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857
|||||||| || |||||||| || |||||| |||||||||||||||||||| ||
Sbjct 5864 TTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 5923
Query 159858 GGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAA 159917
|||||||| || ||||||||| | | || |||| || || || || ||||| || ||
Sbjct 5924 TGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAA 5983
Query 159918 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCA 159977
||| || ||||||||||||||||| ||| || | || | || || | || || || ||
Sbjct 5984 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCA 6043
Query 159978 TGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGC 160037
||||||||||||||| || || || ||||||||||| || ||||| |||||| ||
Sbjct 6044 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGC 6103
Query 160038 GTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160097
||| | || ||||||| ||||| || ||||| ||||||||||| |||||||| |||||
Sbjct 6104 TTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTC 6163
Query 160098 GCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157
|| ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||||
Sbjct 6164 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 6223
Query 160158 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCG 160217
|| || | ||| |||||| || |||| | | ||| | || | ||||| ||
Sbjct 6224 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACG 6283
Query 160218 TGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTT 160277
||| ||||| ||||| |||||| ||| | ||||| |||||||||||||||||||| ||
Sbjct 6284 TGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTT 6343
Query 160278 CTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCA 160337
||||||||| || || ||||| || ||||| |||| ||||||||||| || |||||
Sbjct 6344 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 6403
Query 160338 ACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391
|| ||||||||| |||| ||||||||||| || ||||| | || ||||| ||
Sbjct 6404 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457
>seq2
Length=21306
Score = 598 bits (662), Expect = 5e-166
Identities = 735/997 (74%), Gaps = 8/997 (1%)
Strand=Plus/Plus
Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734
|||||| | ||| |||| ||| | |||||| | || | || ||||| ||||| |
Sbjct 19976 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 20035
Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793
|||||| ||||| || | | |||||| ||||| || || | |||||| | || ||||
Sbjct 20036 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094
Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853
| || || || ||||| || || || ||||| ||| |||| || || | || || ||||
Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154
Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913
| || ||||| ||||| || |||||| ||| || |||||| | ||||| || || |
Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214
Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973
| |||||||||||||| |||| || ||| | || || |||||||||| |||| | |
Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274
Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033
| | |||||| | | || | | || ||||| ||||||||||| || || ||
Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334
Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093
|| | |||||||| || ||||| ||| |||||||| ||||| || || || || | |
Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394
Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153
| || ||| | |||| || | |||||||| ||| || |||| ||||||||| || |
Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454
Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213
| ||||||||||| |||| |||| |||||||||| || || ||||||||||||||||| |
Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514
Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273
| || || ||| | || || ||||| |||||||| || || || ||| |||||||||||
Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574
Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332
| | || ||||| | | | || | ||||| || |||| || || || |
Sbjct 20575 GTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 20633
Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392
||||| | ||||||||||| ||||| || || || ||||| || || ||||| || ||
Sbjct 20634 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 20693
Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452
|| || |||||||||||||| ||| ||||||||||| ||||| || |||||||||||
Sbjct 20694 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTA 20753
Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCAT 158510
||||| |||||||| || || |||||||| || | ||| || ||| || |||||||
Sbjct 20754 GCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTG--CTTTAGGTATCAGTACTATGGCAT 20811
Query 158511 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158570
||||||| || |||||||| || ||||| || | ||||| | || || ||||| | |
Sbjct 20812 TCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTA 20871
Query 158571 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158630
| || ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||
Sbjct 20872 ATACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20931
Query 158631 ACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667
| || || |||||||| || ||||| ||||||| |||
Sbjct 20932 ATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572984439855600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |