Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq2 578 6e-160
seq1 452 6e-122
>seq2
Length=21306
Score = 578 bits (640), Expect = 6e-160
Identities = 715/973 (73%), Gaps = 4/973 (0%)
Strand=Plus/Plus
Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548
||| | || ||||||||| |||| ||||| |||||| | ||||| ||||| || || ||
Sbjct 19998 ACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 20057
Query 174549 GCAACTG-TATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607
|||||| | ||||| ||||| || ||| | | ||||| ||||| || || || || ||
Sbjct 20058 GCAACTTCTGTGTTT-ATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTAT 20116
Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667
|||||||| || |||| || || | || |||||||| || ||||| ||||| || |
Sbjct 20117 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 20176
Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727
||||| ||| || |||||| | ||||| || ||||| ||||||||||| | | ||
Sbjct 20177 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGA 20236
Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787
|||||| | ||||| |||||||||| ||||| |||| | |||||| | ||||| |
Sbjct 20237 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 20296
Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847
|| ||||| ||||||||||| || || ||| | |||||| ||||||||||
Sbjct 20297 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 20356
Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907
||| ||||| || || || |||||||| ||| | || || ||| | |||| || |
Sbjct 20357 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 20416
Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967
|||||||| || || || | ||||| | || || ||||| || ||||||| |||
Sbjct 20417 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 20476
Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027
| | || ||||| || || || |||||| | ||||| || || |||||||| || || ||
Sbjct 20477 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGC 20536
Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087
||||| ||||| ||||| | ||| || ||||||||||| |||| || || | |
Sbjct 20537 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTT 20595
Query 175088 TG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAG 175146
|| || | || || || |||| ||| || || | ||||||| ||||| ||||| |
Sbjct 20596 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 20655
Query 175147 AAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 175206
|||| || ||||| ||||| || || ||||| || || || || |||||||||||||| |
Sbjct 20656 AAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 20715
Query 175207 CTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTA 175266
|| ||||||||||| || || | ||||||||| |||| || ||||| || |||||||
Sbjct 20716 CTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTA 20775
Query 175267 TCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCA 175326
||||||| || || | ||| | || |||||||||||||| ||||||||||| || |
Sbjct 20776 TCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTA 20835
Query 175327 ACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACA 175386
|||| ||||| | || | ||||| | ||| | || || ||||| ||| || | |||
Sbjct 20836 ACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACC 20895
Query 175387 GAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATT 175446
| ||| ||||| |||||||| |||||||| | ||||| || |||||||| ||||||
Sbjct 20896 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATC 20955
Query 175447 TGGCAGCAGCTGA 175459
| || || | |||
Sbjct 20956 TAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 452 bits (500), Expect = 6e-122
Identities = 705/1008 (70%), Gaps = 0/1008 (0%)
Strand=Plus/Plus
Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912
||||||| |||| |||||| | | || || | || | ||| | || ||||| || |
Sbjct 5447 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 5506
Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972
| | || |||| ||| ||| | || | || || ||| | || || ||||| |||||
Sbjct 5507 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 5566
Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032
|| ||||| |||||||| | || ||||||| | || || ||| || | ||
Sbjct 5567 AACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAAC 5626
Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092
||| || || || ||||||||| || | | | |||||| | | |||| ||||||||
Sbjct 5627 AGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCC 5686
Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152
|||| | || || || || || ||| ||| | || || || ||| | ||||||||
Sbjct 5687 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGC 5746
Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212
||| || || || || | || || || |||||| | ||||| ||||| || || ||
Sbjct 5747 TCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATC 5806
Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272
|| | || || || || || || |||||| ||| || || ||||| |||||
Sbjct 5807 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTC 5866
Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332
||| || || | || |||||||| || ||| ||||||||||| || ||||||||
Sbjct 5867 TGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGT 5926
Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392
||||| || ||||||||| | | ||| |||| || || || || ||||| ||||||||
Sbjct 5927 AGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCC 5986
Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452
|| ||||||||||||||||| ||| || | || | || | |||| || || |||||
Sbjct 5987 ATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGG 6046
Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512
| |||||| |||||||| ||| ||||||||| || || || || ||| ||
Sbjct 6047 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTT 6106
Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572
| | || || | |||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct 6107 TAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCA 6166
Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632
|||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| ||
Sbjct 6167 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 6226
Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692
|| | ||| | ||| | | |||| | | || | || || || || |||||
Sbjct 6227 AGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGC 6286
Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752
|| || || || || || ||| | ||||| ||||||||||| ||||| ||||||||
Sbjct 6287 CTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 6346
Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812
||| || || || || | |||||||| | | || |||||||| || ||||| ||
Sbjct 6347 CACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCC 6406
Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
||||| || ||||||| || || |||||||| | || |||||
Sbjct 6407 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 6454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729879207485240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |